View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_high_10 (Length: 589)
Name: NF6594_high_10
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 6 - 562
Target Start/End: Complemental strand, 51432238 - 51431682
Alignment:
| Q |
6 |
ctgagatgaaaagtggaattcccttcaattcactcttttccagtaccaccccttcttctccacaaggaaactctgacaatttgccttctcccccatcagt |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51432238 |
ctgaaatgaaaagtggaattcccttcaattcactcttttccagtaccaccccttcttctccacaaggaaactctgacaatttgccttctcccccatcagt |
51432139 |
T |
|
| Q |
106 |
tggttttcctgctgctgagaagagttccatttgcaggatgcaaggtgctatctcttttattatattattactactaaagaggagcgttagtaacacactc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51432138 |
tggttttcctgctgctgagaagagttccatttgcaggatgcaaggtgctatctcttttattatattattactactaaagaggagcgttagtaacacactc |
51432039 |
T |
|
| Q |
206 |
tttaaaaacacttctcgaacactcactactgcaagcatagaattcacaaccaaaattggaaaccggaaaatgaactttcacactaatttgatctttttag |
305 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51432038 |
tttaaaaacacttttcgaacactcactactacaagcatagaattcacaaccaaaattggaaaccggaaaatgaactttctcactaatttgatctttttag |
51431939 |
T |
|
| Q |
306 |
acggaattagagacgcatttcatattttctttttaaatttttgttgctaagtcaattcgtttaaaatcaattttggtcggtatgtaaccaaagatacatt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
51431938 |
acggaattagagacgcatttcatattttctttttaaatttttgttgctaagtcaattcgtttaaaatcaattttggtcggtgtggaaccaaagatacatt |
51431839 |
T |
|
| Q |
406 |
tcttcatcaagtactatatattaatcaatatgatactaatttaaatcttctatggcttttggttgatattttgtcttcagaatttccattagcacgcaga |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51431838 |
tcttcatcaagtactatatattaatcaatatgatactaatttaaatcttctatggcttttggttgatattttgtcttcagaatttccattagcacgcaga |
51431739 |
T |
|
| Q |
506 |
cagtcacttcaaaggtttcttgagaagaggagaatcaggtagtagtactacctacct |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51431738 |
cagtcacttcaaaggtttcttgagaagaggagaatcaggtagtagtactacctacct |
51431682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 19532284 - 19532337
Alignment:
| Q |
479 |
tcttcagaatttccattagcacgcagacagtcacttcaaaggtttcttgagaag |
532 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
19532284 |
tcttcagaatttccaatagcacgcagacattcacttcaaatgtttcttcagaag |
19532337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University