View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_103 (Length: 219)
Name: NF6594_high_103
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_103 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 24070841 - 24070663
Alignment:
| Q |
18 |
attcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgttagttaatacatacacacacacatatatacctgtgcatggat |
117 |
Q |
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| T |
24070841 |
attcacagatgctattaaaaggtattaaattttgaacaaatatatacatctcatttgttagttaatacatacacacacac--gtatacctctgcatggat |
24070744 |
T |
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| Q |
118 |
atacaaatattacattgatgtttcactatg---atacttactacgaaataaattttcattcaggtgggaaatcaatggcac |
195 |
Q |
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| T |
24070743 |
atacaaattttatattgatgtatcactctgactacacttactatgaaatgatttttgattcaggtgggaaatcactggcac |
24070663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 24079895 - 24080073
Alignment:
| Q |
18 |
attcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgttagttaatacatacacacacacatatatacctgtgcatggat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
24079895 |
attcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgttagttaatacatatacacacac--gtatacctctgcatggat |
24079992 |
T |
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| Q |
118 |
atacaaatattacattgatgtttcactatg---atacttactacgaaataaattttcattcaggtgggaaatcaatggcac |
195 |
Q |
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| T |
24079993 |
atacaaattttatattgatgtatcactctgactacacttactatgaaatgatttttgattcaggtgggaaatcactggcac |
24080073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 28567399 - 28567228
Alignment:
| Q |
18 |
attcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgttagttaatacatacacacacacatatatacctgtgcatggat |
117 |
Q |
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| T |
28567399 |
attcacagatgctattaacaggtattcaattttgaataaatttatacatctcattagttagttaatacatac----------atatacctatgcaaagat |
28567310 |
T |
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| Q |
118 |
atacaaatattacattgatgtttcactatgatacttactacgaaataaattttcattcaggtgggaaatcaatggcacagag |
199 |
Q |
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| T |
28567309 |
atacaaatattacattgatgcttcactctaatacttactatgaaatgatttttgattcaggtgggaaaccactggcacagag |
28567228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26315280 - 26315222
Alignment:
| Q |
19 |
ttcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgtta |
77 |
Q |
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| T |
26315280 |
ttcacagacgctattaacaggtattaaattttgaataaatatatacatcttattagtta |
26315222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 26315221 - 26315120
Alignment:
| Q |
98 |
atatatacctgtgcatggatatacaaatattacattgatgtttcactatgatacttactacgaaataaatt-ttcattcaggtgggaaatcaatggcaca |
196 |
Q |
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|||||||||| || | |||||||||||||||||||||| |||||| |||||||||||| |||| | || || ||||||||||||||||| ||||||| |
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| T |
26315221 |
atatatacctttgaaaagatatacaaatattacattgattcttcactctgatacttacta-taaatgatttcttgattcaggtgggaaatcactggcaca |
26315123 |
T |
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| Q |
197 |
gag |
199 |
Q |
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||| |
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| T |
26315122 |
gag |
26315120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28574227 - 28574157
Alignment:
| Q |
18 |
attcacagatgctattaacaggtattaaattttgaacaaatatatacatctcatttgttagttaatacata |
88 |
Q |
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| T |
28574227 |
attcacagacgctgttaacaggtattcaattttgaataaatatatacatctcataatttagttaattcata |
28574157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 28585282 - 28585208
Alignment:
| Q |
126 |
attacattgatgtttcactatgatacttactacgaaataaatt-ttcattcaggtgggaaatcaatggcacagag |
199 |
Q |
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| T |
28585282 |
attacactgatgcttcactctcatacttactatgaaatgatttcttcattcaggtgggaaatcactggaacagag |
28585208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 28585424 - 28585391
Alignment:
| Q |
20 |
tcacagatgctattaacaggtattaaattttgaa |
53 |
Q |
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| T |
28585424 |
tcacagatgctgttaacaggtattaaattttgaa |
28585391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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