View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_high_11 (Length: 576)

Name: NF6594_high_11
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_high_11
NF6594_high_11
[»] chr4 (17 HSPs)
chr4 (10-557)||(31159340-31159887)
chr4 (259-553)||(31489071-31489371)
chr4 (10-230)||(31019891-31020112)
chr4 (10-230)||(31029772-31029993)
chr4 (10-230)||(31489435-31489655)
chr4 (324-553)||(31030127-31030362)
chr4 (324-553)||(31020246-31020481)
chr4 (388-557)||(31162097-31162264)
chr4 (404-557)||(31496422-31496575)
chr4 (388-556)||(31150820-31150988)
chr4 (70-144)||(31034133-31034207)
chr4 (8-171)||(31150437-31150600)
chr4 (70-169)||(31528560-31528659)
chr4 (281-323)||(31163374-31163416)
chr4 (389-450)||(31476589-31476650)
chr4 (389-557)||(31501592-31501760)
chr4 (384-417)||(31034801-31034834)
[»] chr2 (1 HSPs)
chr2 (14-174)||(17438641-17438801)
[»] chr6 (8 HSPs)
chr6 (442-557)||(33288074-33288189)
chr6 (401-454)||(13608643-13608696)
chr6 (490-553)||(12786226-12786289)
chr6 (471-557)||(33060083-33060169)
chr6 (471-557)||(33265410-33265496)
chr6 (471-557)||(33274554-33274640)
chr6 (476-557)||(9169391-9169472)
chr6 (51-168)||(33402758-33402875)
[»] chr8 (1 HSPs)
chr8 (402-454)||(6472953-6473005)


Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 10 - 557
Target Start/End: Original strand, 31159340 - 31159887
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31159340 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccg 31159439  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa 209  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159440 atatattcgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa 31159539  T
Q  210 attaaaacaaaaagcatgtgagcaggcgaagacaacacaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa 309  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159540 attaaaacaaaaagcatgtgagcaggcgaagacaacaaaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa 31159639  T
Q  310 aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaattgcttacttatgacgcatatccca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  31159640 aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaatttcttacttatgatgcatatccca 31159739  T
Q  410 accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctcca 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31159740 accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatctttcttcgtgtttggcaagggcttctcca 31159839  T
Q  510 taacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159840 taacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 31159887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 259 - 553
Target Start/End: Complemental strand, 31489371 - 31489071
Alignment:
Q  259 tccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcat 358  Q
    ||||| ||||||| |||||| || |||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||||||||||||| |    
T  31489371 tccttgtagagaactgttgtgctaaactttagtttgaaaagggaaagtgaaatcaaatatacatggtaaaatttaattgtcaaagccttaaaatttgctt 31489272  T
Q  359 atg------taaaaccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctt 452  Q
    |||      |||||| ||||||   ||||| ||||||||||||| ||| | |||||| || |||| |||  | |||||||| |||  | |||||||||||    
T  31489271 atggaaaagtaaaacaatcaattaatagaagattgcttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctt 31489172  T
Q  453 tgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcat 552  Q
    |||||||  |  || |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||||||    
T  31489171 tgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcat 31489072  T
Q  553 a 553  Q
    |    
T  31489071 a 31489071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31019891 - 31020112
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||  ||| || ||||||| ||||||||||||| ||||||| ||||||||||    
T  31019891 acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca 31019990  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- 207  Q
    ||||||    |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | |||||||   ||||||||| |||||     
T  31019991 atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga 31020089  T
Q  208 aaattaaaacaaaaagcatgtga 230  Q
    |||||||||||||||||||||||    
T  31020090 aaattaaaacaaaaagcatgtga 31020112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31029772 - 31029993
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||  ||| || ||||||| ||||||||||||| ||||||| ||||||||||    
T  31029772 acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca 31029871  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- 207  Q
    ||||||    |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | |||||||   ||||||||| |||||     
T  31029872 atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga 31029970  T
Q  208 aaattaaaacaaaaagcatgtga 230  Q
    |||||||||||||||||||||||    
T  31029971 aaattaaaacaaaaagcatgtga 31029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 31489655 - 31489435
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| || |||| || ||||||| ||||||||||||| ||||| | ||||||||||    
T  31489655 acatcatcaatggagtccaaaagtaatagatttgctactttatctatatgagaattcataccaactagttcttttggaagagatgaataattgtgaccca 31489556  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtt-ttaaaaagtcaccaaataacaacaaatcattacattaaga 208  Q
    ||||||    |||||| ||||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||||||   |||||||||| ||||     
T  31489555 atatattcaatatctcgtcaacaatctttttaatctcttcatattgaggcctgaaagttaagaaaaagtcaaccaataacacttaatcattaca-taagg 31489457  T
Q  209 aattaaaacaaaaagcatgtga 230  Q
    ||||||||||||||| ||||||    
T  31489456 aattaaaacaaaaagaatgtga 31489435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 553
Target Start/End: Original strand, 31030127 - 31030362
Alignment:
Q  324 gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga 417  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||      | ||||||   ||||| ||||||||||||| ||| | |||||| |||||||    
T  31030127 gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga 31030226  T
Q  418 gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc 517  Q
     |||  | |||||||| |||  | ||||||| ||||||||||  |  ||||||||||||||| ||| ||| ||||||| || |||||| || ||| ||||    
T  31030227 tattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc 31030326  T
Q  518 attttgatgtctcacctcagaaggatcaacatcata 553  Q
     |||||||||||||||||||||||||||||||||||    
T  31030327 tttttgatgtctcacctcagaaggatcaacatcata 31030362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 553
Target Start/End: Original strand, 31020246 - 31020481
Alignment:
Q  324 gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga 417  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||      | ||||||   ||||| ||||||||||||| ||| | |||||| |||||||    
T  31020246 gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga 31020345  T
Q  418 gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc 517  Q
     |||  | |||||||| |||  | ||||||| ||||||||||  |  || |||||||||||| ||| ||| ||||||| || |||||| || ||| ||||    
T  31020346 tattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc 31020445  T
Q  518 attttgatgtctcacctcagaaggatcaacatcata 553  Q
     |||||||||||||||||||||||||||||||||||    
T  31020446 tttttgatgtctcacctcagaaggatcaacatcata 31020481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 388 - 557
Target Start/End: Original strand, 31162097 - 31162264
Alignment:
Q  388 cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc 487  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||| ||  | ||||||||||||| |||||||| || || ||||||||| ||| |||    
T  31162097 cttacttatgacgcacatcccaaccagag--attggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttc 31162194  T
Q  488 gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
     ||||||  || ||||||  ||||| |||| ||||||| ||||| |||| ||||||||||||||||||||    
T  31162195 atgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaa 31162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 557
Target Start/End: Complemental strand, 31496575 - 31496422
Alignment:
Q  404 atcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggct 503  Q
    |||||||||||||||||  ||||||||| |||||  | ||||||||||||| |||||||  || || ||||||||| ||| ||| |||||| |||  |||    
T  31496575 atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttcatgtttgacaaatgct 31496476  T
Q  504 tctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    || |||||| ||||| |||| | || ||||  |||||| |||||||||||||||    
T  31496475 tcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaa 31496422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 556
Target Start/End: Original strand, 31150820 - 31150988
Alignment:
Q  388 cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc 487  Q
    ||||||||| ||| | |||||| |||||||||||||| |||||||| ||   | ||||||||||||| || || ||  | |  ||||||||| |||||||    
T  31150820 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 31150919  T
Q  488 gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaa 556  Q
     ||||| || | ||||||  |||||| ||| ||||||| || |||||| || |||||||||||||||||    
T  31150920 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaa 31150988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 31034133 - 31034207
Alignment:
Q  70 ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatc 144  Q
    |||||||| ||||||||||||| ||||||   || ||||||| ||| | ||||||||||||||||||||||||||    
T  31034133 ccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttttcaatc 31034207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 31150437 - 31150600
Alignment:
Q  8 ggacatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacc 107  Q
    ||||||||||||  ||||||||||||||  | ||| ||| ||  | || |||| |||  || || ||||| | ||||||||||   ||||| |||| |||    
T  31150437 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 31150536  T
Q  108 caatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta 171  Q
    ||| |||| |   ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  31150537 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta 31150600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 31528560 - 31528659
Alignment:
Q  70 ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttt 169  Q
    |||||||| || |||||||| | ||||||||||  |  |||||||| |  |||||||||||||||||||| |||||||||  | || |||||||||||||    
T  31528560 ccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgctgactggggcctgaaagttt 31528659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 31163374 - 31163416
Alignment:
Q  281 tcaactatagtttgaaaagggaaagtgaaaacaaatatatatt 323  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  31163374 tcaactatagtttgaaaagagaaagtgaaatcaaatatatatt 31163416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 31476650 - 31476589
Alignment:
Q  389 ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatc 450  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||| |||  |||||||||||    
T  31476650 ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatc 31476589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 557
Target Start/End: Complemental strand, 31501760 - 31501592
Alignment:
Q  389 ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcg 488  Q
    |||||||| ||| | ||| |||||||| |||  |||||||||||| |||  | ||||||||||| | |||||||  || || ||||||||| ||| |||     
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  489 tgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    |||||| |||  ||||| | |||| | ||| |||| | || |||| | | |||||||||||||||||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaa 31501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 31034801 - 31034834
Alignment:
Q  384 attgcttacttatgacgcatatcccaaccagaga 417  Q
    |||||||||||||||||||||||||| |||||||    
T  31034801 attgcttacttatgacgcatatcccatccagaga 31034834  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 17438801 - 17438641
Alignment:
Q  14 catcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatat 113  Q
    ||||||| ||||||||||||||  |||||  || |  ||||||| || ||||||| |||||||| ||||||| |  ||||||| |||||    |||||||    
T  17438801 catcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaagatttgcattccaatat 17438702  T
Q  114 atgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaa 174  Q
    ||   |||||| || ||||||||||| |||||||||| |||| ||||||||||||| ||||    
T  17438701 attcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtttgaaaa 17438641  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 557
Target Start/End: Original strand, 33288074 - 33288189
Alignment:
Q  442 ccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaagg 541  Q
    |||||||||||   |||||||  || || ||||||||| ||| ||| ||| ||| || |||||| |||||| | ||| |||| | || ||||||||||||    
T  33288074 ccctccatcttgacaccatctgagagtcttgttggaatgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaagg 33288173  T
Q  542 atcaacatcatagaaa 557  Q
    ||||||||||||||||    
T  33288174 atcaacatcatagaaa 33288189  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 13608696 - 13608643
Alignment:
Q  401 catatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg 454  Q
    |||||||||||||||||||||||| |||||||||||   | |||||||||||||    
T  13608696 catatcccaaccagagagattggctacttgtgttagggctcccctccatctttg 13608643  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 553
Target Start/End: Original strand, 12786226 - 12786289
Alignment:
Q  490 gtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcata 553  Q
    |||||||||||| ||| |||||||  ||| |||| | || ||||||||||||||||||||||||    
T  12786226 gtttggcaagggattcgccataaccaccactttgctttcgcacctcagaaggatcaacatcata 12786289  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33060083 - 33060169
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| |||||| |||  ||||| | |||| ||||| |||| |  | ||||||||||||||||||||||||||||    
T  33060083 tgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaa 33060169  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33265410 - 33265496
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33265410 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33265496  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33274554 - 33274640
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33274554 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33274640  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 9169391 - 9169472
Alignment:
Q  476 gaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    |||| ||| ||| ||||||||||  ||||| | |||| | ||| |||| | || ||||||||||||||||||||||||||||    
T  9169391 gaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaa 9169472  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 33402758 - 33402875
Alignment:
Q  51 ttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgca 150  Q
    |||||||||| |||  || |||||||| ||||||| || ||||||| |||||    |||||||||   |||||| || ||||||||||| ||||||| ||    
T  33402758 ttctataggagaatcaatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcattatcttttgaacaatctttttaatctctcca 33402857  T
Q  151 tattgaggcctgaaagtt 168  Q
      ||| ||||||||||||    
T  33402858 gcttgtggcctgaaagtt 33402875  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 6472953 - 6473005
Alignment:
Q  402 atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg 454  Q
    ||||||||||||||||||||||| |||||||||||   | |||||||||||||    
T  6472953 atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg 6473005  T

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