View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_16 (Length: 508)
Name: NF6594_high_16
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_16 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7246231 - 7246474
Alignment:
| Q |
1 |
tcatcatgagaataagatgttgagtccaaaaagaggtgatgagtagtagcatcttgagtttgaaaatgagaatgatcaagtggtttagaagaggtaattg |
100 |
Q |
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| T |
7246231 |
tcatcctgagaataagatgttgagtccaaaaagaggtgatgagtagtagcatcttgagtttgaaaatgagaatgatcaagtgggttagtagaggtaattg |
7246330 |
T |
|
| Q |
101 |
attgagagtaatagtaagggtttaaagaagagttttgataggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagagaaagggaa |
200 |
Q |
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| T |
7246331 |
attgagagtaatagtaagggtttaaagaagagttttggtaggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagagaaagggaa |
7246430 |
T |
|
| Q |
201 |
agaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
244 |
Q |
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| T |
7246431 |
agaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
7246474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 302 - 493
Target Start/End: Original strand, 7246532 - 7246723
Alignment:
| Q |
302 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
401 |
Q |
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| T |
7246532 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
7246631 |
T |
|
| Q |
402 |
tctccatttcttgccatctgttcttctgcacctccctggctctgggtctacttttctgccaaatcccatttcaaaacatccccacccaactg |
493 |
Q |
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| T |
7246632 |
tctccatttcttgccatctgttcttctgcacctccctggctctgggtctacttttctgccaaatcccatttcaaaacatccccacccaactg |
7246723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 13137222 - 13137278
Alignment:
| Q |
318 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactt |
374 |
Q |
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| T |
13137222 |
ttccacaagctttcttgaacgatttcgacctctgtgcatgtgacgttcacaatactt |
13137278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 52052075 - 52051922
Alignment:
| Q |
318 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
417 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
52051976 |
T |
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| Q |
418 |
tctgttcttctgcacctccctggctctgggtctacttttctgccaaatcccatt |
471 |
Q |
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| T |
52051975 |
tctgttcttctacacctacctggctctgggtctatttttcttcctaatcccatt |
52051922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 318 - 472
Target Start/End: Original strand, 18199801 - 18199955
Alignment:
| Q |
318 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
417 |
Q |
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||||||||||||||||||||||||| | ||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| || ||| |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca |
18199900 |
T |
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| Q |
418 |
tctgttcttctgcacctccctggctctgggtctacttttctgccaaatcccattt |
472 |
Q |
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| T |
18199901 |
tctgttcttctacatctacctggctctggatctatttttcttcctaaacccattt |
18199955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
| Q |
316 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
375 |
Q |
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| T |
42092016 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 399189 - 399058
Alignment:
| Q |
318 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
417 |
Q |
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|||||||||||||||||||||||| | || | ||||||||| | ||||||||||| |||||||| ||||||||||| ||||| ||||| || || ||| |
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| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctccacttttttcca |
399090 |
T |
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| Q |
418 |
tctgttcttctgcacctccctggctctgggtc |
449 |
Q |
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| T |
399089 |
tcagtcctcctacatcttcctggctccgggtc |
399058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 11196820 - 11196771
Alignment:
| Q |
400 |
catctccatttcttgccatctgttcttctgcacctccctggctctgggtc |
449 |
Q |
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||||||||||| || |||||||||||||| ||||| ||||| |||||||| |
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| T |
11196820 |
catctccattttttaccatctgttcttctacacctacctggttctgggtc |
11196771 |
T |
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