View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_24 (Length: 438)
Name: NF6594_high_24
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 53614107 - 53613684
Alignment:
| Q |
1 |
tgatgttatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctg |
100 |
Q |
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| T |
53614107 |
tgatgttatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctg |
53614008 |
T |
|
| Q |
101 |
cagcagatgttagactgtcagtnnnnnnnntgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatatttacctt |
200 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53614007 |
cagcagatgttagactgtcagtaaaaaaaatgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatattaacctt |
53613908 |
T |
|
| Q |
201 |
ttctagagtctggcaacacaaatgaacttttactcttcatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgaca |
300 |
Q |
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| T |
53613907 |
ttctagagtctggcaacacaaatgaacttttactcttaatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgaca |
53613808 |
T |
|
| Q |
301 |
tatcagctgaggtcatactcattttatcatcacatattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53613807 |
tatcagctgaggtcatactcattttatcatcacaaattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatat |
53613708 |
T |
|
| Q |
401 |
acgtcgaaattatcaggtgattga |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
53613707 |
acgtcgaaattatcaggtgattga |
53613684 |
T |
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