View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_25 (Length: 437)
Name: NF6594_high_25
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 221 - 427
Target Start/End: Original strand, 38282682 - 38282893
Alignment:
| Q |
221 |
ctacaacaacaattttaaccactaaaaatttattata----tataagcttatttagataaacaacttattaaacgtttataggacaaaagtttgtcatat |
316 |
Q |
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| T |
38282682 |
ctacaacaacaattttaaccactaaaaatttattatatatatataagcttatttagataaacaacttattaaacgtttataggacaaaagtttgtcatat |
38282781 |
T |
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| Q |
317 |
gataagcgtttatttataagatatttcaataat-aaaaatggaagctatcaggaaagacctacatgttcttttnnnnnnnngacctacatgtataacact |
415 |
Q |
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| T |
38282782 |
gataagcgtttatttataagatatttcaataataaaaaacggaagctatcaggaaagacctacatgttcttttaaaaaaaacacctacatgtataacact |
38282881 |
T |
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| Q |
416 |
acaatgattctt |
427 |
Q |
| |
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|||||||||||| |
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| T |
38282882 |
acaatgattctt |
38282893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 38282524 - 38282682
Alignment:
| Q |
17 |
aattcaaagtcatttgtaatacataggcttatttaattgcacaaacagagtttgaattaattaatagcatagcactccaactctattgatttgagttaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38282524 |
aattcaaagtcatttgtaatacataggcttatttaattgcacaaacagagtttgaattaattaatagcatagcaccccaactctattgatttgagttaat |
38282623 |
T |
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| Q |
117 |
caacaaagtttgaattaataacataaa------cacccccaactcgatacttaaacgcc |
169 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38282624 |
caacaaagtttgaattaataacataaacacccccacccccaactcgatacttaaacgcc |
38282682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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