View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_38 (Length: 364)
Name: NF6594_high_38
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 35520397 - 35520750
Alignment:
| Q |
11 |
aaaatatatcgcattcaaccatcaacttcatctccatgttctaataaagggtggctcattagagtttttctgtcaagttcttccaaactttatctccttg |
110 |
Q |
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| T |
35520397 |
aaaatatatcgcattcaaccatcaacttcatctccatgttctaataaagggtggctcattagagtttttctgtcaagttcttccaaactttatctccttg |
35520496 |
T |
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| Q |
111 |
atttcttcactaaccagagactccgaactatggagactataaacaaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactcc |
210 |
Q |
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| T |
35520497 |
atctcttcactaaccagagactccgaactatggagactataaacaaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactcc |
35520596 |
T |
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| Q |
211 |
tagtaatcttaaaggtgaaattgattttcattatttttgcagcattcgcaaagtaatattttcttccattgagggtcattgcatggtctttgcactgtat |
310 |
Q |
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| T |
35520597 |
tagtaatcttaaaggtgaaattgattttcattatttttgcagcattcgcaaagtaatcttttcttccattgagggtcattgtatggtctttgcactgtat |
35520696 |
T |
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| Q |
311 |
tcgggtaaagcggtgatagtttccaatattgaagaaaatacatataccatgtta |
364 |
Q |
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| T |
35520697 |
tcaggtaaagcggtgatagtttccaacattgaagaaaatacatataccatgtta |
35520750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 38813848 - 38813794
Alignment:
| Q |
155 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
209 |
Q |
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| T |
38813848 |
aaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactc |
38813794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 38825712 - 38825658
Alignment:
| Q |
155 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
209 |
Q |
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| T |
38825712 |
aaagtgttgaatttgatgaacattcaagttgtggagttgtttgaactatacactc |
38825658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 38813721 - 38813631
Alignment:
| Q |
258 |
gcaaagtaatattttcttccattgagggtcattgcatggtctttgcactgtattcgggtaaagcggtgatagtttccaatattgaagaaaa |
348 |
Q |
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| T |
38813721 |
gcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataaagagttgactgtttccaatattggagaaaa |
38813631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 35549115 - 35549061
Alignment:
| Q |
155 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
209 |
Q |
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| T |
35549115 |
aaagtattgaatttgatgaactatcgatttgtggagttgtttgaaggatatactc |
35549061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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