View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_high_39 (Length: 359)
Name: NF6594_high_39
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 32761189 - 32760840
Alignment:
| Q |
9 |
acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32761189 |
acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca |
32761090 |
T |
|
| Q |
109 |
gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32761089 |
gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg |
32760990 |
T |
|
| Q |
209 |
ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32760989 |
ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt |
32760890 |
T |
|
| Q |
309 |
gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgac |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32760889 |
gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgac |
32760840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University