View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_40 (Length: 347)
Name: NF6594_high_40
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 33 - 340
Target Start/End: Complemental strand, 39031566 - 39031257
Alignment:
| Q |
33 |
acttctccatattcaaaaatatgtgagctttatccattatattatttgattaaaaagataaaaatattattcatcatctctcaataaaaatatggaccat |
132 |
Q |
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| T |
39031566 |
acttcttcacatttaaaaatatgtgagctctattcattatactatttgattaaaaaaataaaaatattattcatcatctcttaataaaaatatggaccat |
39031467 |
T |
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| Q |
133 |
tgtgtatgcgggagtagagaaagatggggtcacgaggtgaaggtaacattacattacttttgaagtgcatcattaacaa--acactttgttaaaagatag |
230 |
Q |
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| T |
39031466 |
tgtgtatgcgggagtagagaaagatggggtcacgaggtgaaggtaacattacattacttttgaagtgcatcattaacaatgacactttgttaaaagatag |
39031367 |
T |
|
| Q |
231 |
agattattaattgatttatggggtgtgcttgctttgaaaaaagatggtactttcgtacccacatcacatatagtacttggatgatatggagtggggtgac |
330 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| |
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| T |
39031366 |
agattattagttgatttatgggatgtgcttgctttgaaaaaagatggtactttcatacccacatcacatatagtatttggatgacatagagtggggtgac |
39031267 |
T |
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| Q |
331 |
attgatgaca |
340 |
Q |
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|||| ||||| |
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| T |
39031266 |
attggtgaca |
39031257 |
T |
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