View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_high_45 (Length: 336)

Name: NF6594_high_45
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_high_45
NF6594_high_45
[»] chr8 (4 HSPs)
chr8 (88-332)||(9677601-9677844)
chr8 (88-316)||(9693357-9693585)
chr8 (17-60)||(9677870-9677913)
chr8 (146-191)||(30652024-30652069)
[»] chr4 (5 HSPs)
chr4 (98-312)||(35160435-35160649)
chr4 (98-310)||(35154044-35154256)
chr4 (144-309)||(15555032-15555197)
chr4 (183-310)||(37147414-37147541)
chr4 (146-191)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (141-302)||(46469649-46469810)
chr3 (141-296)||(5155227-5155382)
chr3 (144-303)||(46478252-46478411)
chr3 (216-316)||(47398294-47398394)
chr3 (123-314)||(4582480-4582671)
chr3 (143-301)||(16023908-16024066)
chr3 (227-316)||(47414938-47415027)
chr3 (125-214)||(51942045-51942134)
chr3 (219-303)||(46507113-46507197)
chr3 (198-308)||(46490048-46490158)
chr3 (201-308)||(46497368-46497475)
chr3 (198-298)||(45900912-45901012)
[»] chr6 (1 HSPs)
chr6 (146-297)||(16967863-16968014)
[»] chr2 (4 HSPs)
chr2 (163-315)||(20143500-20143652)
chr2 (141-269)||(20154383-20154511)
chr2 (163-315)||(20169858-20170010)
chr2 (146-191)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (146-191)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 88 - 332
Target Start/End: Complemental strand, 9677844 - 9677601
Alignment:
Q  88 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9677844 tggctcaccttgatcaatcaagcaccaaccatgcgaaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 9677745  T
Q  188 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 287  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9677744 accattgtctctccaagttgttctcagtatcatcgctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgat 9677645  T
Q  288 catctcaactccttcgtctctcatctcctctctgctcctcctcaa 332  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||    
T  9677644 catctcaactccttcgtctctcatctcctttctg-tcctcctcaa 9677601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 88 - 316
Target Start/End: Complemental strand, 9693585 - 9693357
Alignment:
Q  88 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 187  Q
    |||||||||||||| |||||||||||||| | |||||| ||||||||||  | |||||||||||||||||||||||||||||||| || |||||||||||    
T  9693585 tggctcaccttgatgaatcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttc 9693486  T
Q  188 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 287  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  9693485 accattgtctctccaagttgttctcagcatcatcgctgttggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgat 9693386  T
Q  288 catctcaactccttcgtctctcatctcct 316  Q
    |||||||||| ||| ||||||||||||||    
T  9693385 catctcaacttctttgtctctcatctcct 9693357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 9677913 - 9677870
Alignment:
Q  17 cagttgaaaaatcaaaagaaggaaattaacaaacaatggttcgc 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9677913 cagttggaaaatcaaaagaaggaaattaacaaacaatggttcgc 9677870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 30652024 - 30652069
Alignment:
Q  146 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 191  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 30652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 312
Target Start/End: Original strand, 35160435 - 35160649
Alignment:
Q  98 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 197  Q
    |||| ||||||||| |||| |  |||||||||| |||||  | | ||||||||||||||| ||||||||||| || ||| |||| ||||| |||||||||    
T  35160435 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 35160534  T
Q  198 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 297  Q
    ||||||||||| ||||| || ||| ||| ||||||||||||| | || |||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  35160535 ctccaagttgtgctcagcataatcactgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 35160634  T
Q  298 ccttcgtctctcatc 312  Q
    |||  ||||||||||    
T  35160635 cctcagtctctcatc 35160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 310
Target Start/End: Original strand, 35154044 - 35154256
Alignment:
Q  98 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 197  Q
    |||| ||||||||  |||| || ||||||||||||||||  | ||||||||||| |||||||| |||||||| || ||  |||| ||||| || ||||||    
T  35154044 tgatgaatcaagctgcaaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtct 35154143  T
Q  198 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 297  Q
    |||||||| || ||    |||||||||| ||||||||| ||| | || | ||||||||||||| |||||||||  |||||||||  | ||||||||||||    
T  35154144 ctccaagtagtgcttgcaatcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T
Q  298 ccttcgtctctca 310  Q
    |||||||||||||    
T  35154244 ccttcgtctctca 35154256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 309
Target Start/End: Original strand, 15555032 - 15555197
Alignment:
Q  144 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 243  Q
    |||||||||||||| ||| || |  |||||||| | || ||||||||  | ||  | |||||| ||||||| |||||||||| ||||||||||||| | |    
T  15555032 aaacatctcttctctaaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttcca 15555131  T
Q  244 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctc 309  Q
    | || ||||| ||||||||||||||||| || ||||||||| |||| ||||||||| || ||||||    
T  15555132 cacagcaacaacttctcgacttcctccgctttaaatccatccatcaactcaactccgtcatctctc 15555197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 37147414 - 37147541
Alignment:
Q  183 ttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatcca 282  Q
    ||||| || ||||| |||||||||||||| ||||| ||||||| ||||||  ||||||| || ||||||||  ||||||||||||||   || |||||||    
T  37147414 ttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcgactttaaatcca 37147513  T
Q  283 tcgatcatctcaactccttcgtctctca 310  Q
    || ||||| ||||||  ||||| |||||    
T  37147514 tcaatcatgtcaacttattcgtttctca 37147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 16298996 - 16299041
Alignment:
Q  146 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 191  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 16299041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 302
Target Start/End: Original strand, 46469649 - 46469810
Alignment:
Q  141 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 240  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||| ||  |||| ||||||||| | ||||  ||  |||||| || |||||||||||    
T  46469649 gccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactccaagttatgctcaacattgtcgctgctgcctctgagggtc 46469748  T
Q  241 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttc 302  Q
     ||| |||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||    
T  46469749 gtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactccttc 46469810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 296
Target Start/End: Original strand, 5155227 - 5155382
Alignment:
Q  141 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 240  Q
    ||||||||||| ||||  ||||||| |||||| ||| | || ||||| ||| ||||||| |||||||| || || |||||||||| ||||||||||||||    
T  5155227 gccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtc 5155326  T
Q  241 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaac 296  Q
    | || ||||||||||||||||||||||||| || ||||||||  || |||||||||    
T  5155327 ccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 303
Target Start/End: Original strand, 46478252 - 46478411
Alignment:
Q  144 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 243  Q
    |||||||||||||| |||||||||||||||||| |||| ||||| ||| | || ||||||||||| || ||||| ||||||  ||| ||||||||||| |    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  244 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 303  Q
    |||||||||| ||| || ||||||| |  | |||||||| |||||||||||||| |||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcg 46478411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 47398394 - 47398294
Alignment:
Q  216 atcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 315  Q
    |||| ||||| ||||||||||||||| || |||||| ||||||||||||||||  ||| ||| ||||  || |||||||||||||||| |||||||||||    
T  47398394 atcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctcatctcc 47398295  T
Q  316 t 316  Q
    |    
T  47398294 t 47398294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 314
Target Start/End: Complemental strand, 4582671 - 4582480
Alignment:
Q  123 aaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcg 222  Q
    |||||||||||||   | |||||| |||||||||||||||||||||| || ||| | || ||||| ||| | || ||||||||||  ||||| || ||||    
T  4582671 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 4582572  T
Q  223 ctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctc 314  Q
    ||| ||||||||| || || ||   | ||||||||||||||||||| |  | |||||| |  ||||||||||||||||| |  |||||||||    
T  4582571 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcctttgcttctcatctc 4582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 301
Target Start/End: Original strand, 16023908 - 16024066
Alignment:
Q  143 caaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcct 242  Q
    |||||||||||| |||||| |||||||||| ||| || | ||||| ||  | || || ||||||||||||||  | ||||||| ||| || ||||| ||     
T  16023908 caaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagccttatcgctgctggatccgagggaccg 16024007  T
Q  243 actcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcctt 301  Q
    || ||||||||||||||| |||||||||| | | |||| | | || |||||||||||||    
T  16024008 acacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcctt 16024066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 47415027 - 47414938
Alignment:
Q  227 tggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcct 316  Q
    ||||||||||||| | || || ||| ||||||||||||||||| | |  |||||||| ||||||||||||||||| | ||||||||||||    
T  47415027 tggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctcct 47414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 51942045 - 51942134
Alignment:
Q  125 agtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcag 214  Q
    |||||||||||   | ||||||||| | ||||||||| ||||||| |||||| |||||||||| ||||||||||| |||||||| |||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcag 51942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 46507197 - 46507113
Alignment:
Q  219 atcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 303  Q
    |||||||  |||||||||||||| |||||||||||| |||| ||||||||| | | |||||| ||| ||||||||||||| ||||    
T  46507197 atcgctgccggctctgagggtcccactcaacaacagattcttgacttcctctgctccaaatctatccatcatctcaactcattcg 46507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 46490048 - 46490158
Alignment:
Q  198 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 297  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||  | || |||||||||||||| ||||||||||  |  || |||| |||||| |||||||    
T  46490048 ctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcctccaatctaactccaccgatcaactcaact 46490147  T
Q  298 ccttcgtctct 308  Q
    | |||| ||||    
T  46490148 cattcgcctct 46490158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 46497368 - 46497475
Alignment:
Q  201 caagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcct 300  Q
    |||||||| || || |||||||||  |||||| ||||| || || |||||||| |||||| |||||||||  | |||||||| | |||| ||||||||||    
T  46497368 caagttgtgctaagcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactcct 46497467  T
Q  301 tcgtctct 308  Q
    ||| ||||    
T  46497468 tcgcctct 46497475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 45900912 - 45901012
Alignment:
Q  198 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 297  Q
    ||||||||| ||||||| ||||| |||| |||  |||||||||| || ||||| |||||| || |||||||||  ||  |||||| ||| ||||||||||    
T  45900912 ctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaatccaccgaccatctcaact 45901011  T
Q  298 c 298  Q
    |    
T  45901012 c 45901012  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 297
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  146 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctact 245  Q
    |||||| ||||| |||||||| ||||||||| |||| ||||||||| | || |||||||||||  | || || |||||| |||| ||||||||||| |||    
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  246 caacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 297  Q
    |||||||| ||| || | |||||||  | |||||||||||||||||||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 20143500 - 20143652
Alignment:
Q  163 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 262  Q
    |||||||||| ||| |||| ||||| ||| | || |||||| |||| |||||  | ||||||| ||| ||||| | ||| || |||||||| ||| ||||    
T  20143500 aatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcga 20143599  T
Q  263 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 315  Q
    ||||||||| |||||||||| | ||||||| |||||||||  |||| ||||||    
T  20143600 cttcctccgcttcaaatccaccaatcatcttaactccttcacctcttatctcc 20143652  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 20154383 - 20154511
Alignment:
Q  141 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 240  Q
    ||||||||||| ||||  ||| |||||||||| ||| | || ||||| ||| |||| |||||||||||  ||||  ||| ||||| ||||||||| ||||    
T  20154383 gccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaaggtc 20154482  T
Q  241 ctactcaacaacagcttctcgacttcctc 269  Q
    | || |||||||||||| |||||||||||    
T  20154483 ccacacaacaacagcttgtcgacttcctc 20154511  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 20170010 - 20169858
Alignment:
Q  163 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 262  Q
    |||||||||| |||||||| ||||||||| | || || ||| |||| |||||  | || |||  ||| ||||| ||||| ||  ||||||| ||| ||||    
T  20170010 aatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttgtcga 20169911  T
Q  263 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 315  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||| ||||||    
T  20169910 cttcctccgtttcaaatccaccaatcatctcaattccttcgcctcttatctcc 20169858  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 39548117 - 39548162
Alignment:
Q  146 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 191  Q
    |||||||||||| |||||||||||||||||| || | |||||||||    
T  39548117 acatctcttctccaaagaatcagacaacaacatcatgttttcacca 39548162  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 33097480 - 33097525
Alignment:
Q  146 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 191  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 33097525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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