View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_high_46 (Length: 332)
Name: NF6594_high_46
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_46 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 119 - 320
Target Start/End: Complemental strand, 1196854 - 1196653
Alignment:
| Q |
119 |
tgacccaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactgtattacctcaacaccacattcacaagccaatttcaacca |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196854 |
tgacacaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactctattacctcaacaccacattcacaagccaatttcaacca |
1196755 |
T |
|
| Q |
219 |
aatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattctt |
318 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||| | || || |||||||| |||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
1196754 |
aatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcgatcttaaattctttgataggcaaactttggtcacgaaacattagcattctt |
1196655 |
T |
|
| Q |
319 |
ct |
320 |
Q |
| |
|
|| |
|
|
| T |
1196654 |
ct |
1196653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 168 - 320
Target Start/End: Complemental strand, 1180463 - 1180311
Alignment:
| Q |
168 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
1180463 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtacctaactacaaaaccattcaaattg |
1180364 |
T |
|
| Q |
268 |
agcttaaattttttgatagctaatctttggtcaagaaacattagcattcttct |
320 |
Q |
| |
|
||| |||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
1180363 |
agcctaaattttttgatagccaaactttggtcacgaaacattagcattcttct |
1180311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 1197100 - 1196996
Alignment:
| Q |
19 |
acaatgacataccttaatgaatgctttggcgcacgaaaaagaa-tagttgcaggaca---gcttgcaagtaagatatttacatgagacgagaacaaatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1197100 |
acaatgacataccttaatgaatgctttggcgcatgaaaaagaaatagttgcaggacaacagcttgcaagtaagataattacatgagacgagaacaaatat |
1197001 |
T |
|
| Q |
115 |
tcttt |
119 |
Q |
| |
|
||||| |
|
|
| T |
1197000 |
tcttt |
1196996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 1186619 - 1186577
Alignment:
| Q |
19 |
acaatgacataccttaatgaatgctttggcgcacgaaaaagaa |
61 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
1186619 |
acaatgacatacctcaatgaatgctttggcgtacgaaaaagaa |
1186577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 1192288 - 1192245
Alignment:
| Q |
73 |
cagcttgcaagtaagatatttacatgagacgagaacaaatattc |
116 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1192288 |
cagcttgaaagtaagatatttacaagagacgagaataaatattc |
1192245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 1185834 - 1185801
Alignment:
| Q |
162 |
aacccattgggaatactgtattacctcaacacca |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
1185834 |
aacccattgggaatactctattacctcaacacca |
1185801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University