View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_53 (Length: 292)
Name: NF6594_high_53
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_53 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 48453 - 48222
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48453 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
48355 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48354 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
48255 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
48254 |
tgtcatgttagtgttactatctggatcagtgct |
48222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 60992 - 60761
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60992 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
60894 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
60893 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
60794 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
60793 |
tgtcatgttagtgttactatctggatcagtgct |
60761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 73111 - 72880
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73111 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
73013 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
73012 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
72913 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
72912 |
tgtcatgttagtgttactatctggatcagtgct |
72880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 18691802 - 18691571
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691802 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
18691704 |
T |
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| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18691703 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
18691604 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
18691603 |
tgtcatgttagtgttactatctggatcagtgct |
18691571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 15699541 - 15699310
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699541 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
15699443 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15699442 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
15699343 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
15699342 |
tgtcatgttagtgttactatctggatcagtgct |
15699310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 15712080 - 15711849
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15712080 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
15711982 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15711981 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
15711882 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
15711881 |
tgtcatgttagtgttactatctggatcagtgct |
15711849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 15724558 - 15724327
Alignment:
| Q |
57 |
gaggtaccaacgtagtgtagtttgttgtaattgtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15724558 |
gaggtaccaacgtagtgtagtttgttgtaat-gtgattcattcaattatcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtctt |
15724460 |
T |
|
| Q |
157 |
cgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaagacatctcg |
256 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15724459 |
cgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcg |
15724360 |
T |
|
| Q |
257 |
tgtcatgttagtgttactatctggatctgtgct |
289 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
15724359 |
tgtcatgttagtgttactatctggatcagtgct |
15724327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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