View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_57 (Length: 286)
Name: NF6594_high_57
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_57 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 40254557 - 40254291
Alignment:
| Q |
3 |
acctcatttttggaagaaatcatatttagctagctattcaggtatgctgctaatattaggtaaattacttacaaaacaaaagtgaataacatataagatt |
102 |
Q |
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| T |
40254557 |
acctcatttttggaagaaatcatatttagctagctattcaggtatgctgctaatattaggtaaattacttacaagacaaaagtgaataacatataagatt |
40254458 |
T |
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| Q |
103 |
ttgaaaataaatgtgacattgtttttatattccaattcagaagtggtttagtctgttaacctctgctagtttatagggatgttgttttccattctatcat |
202 |
Q |
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| T |
40254457 |
ttgaaaataaatgtgacattgtttttatattccaattcagaagtggtttagtctgttaacctctcctagtttatagggatgttgttttccattctatcat |
40254358 |
T |
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| Q |
203 |
taatatccacttctctaattgttaattgattttggtctatttttggacctatattgtagagacacat |
269 |
Q |
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| T |
40254357 |
taatatccacttctctaattgttaattgattttggtctatttttggacctatattgtagagacacat |
40254291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 26281601 - 26281553
Alignment:
| Q |
197 |
tatcattaatatccacttctctaattgttaattgattttggtctatttt |
245 |
Q |
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| T |
26281601 |
tatcattaatagctatttctctaactgttaattgcttttggtctatttt |
26281553 |
T |
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