View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_60 (Length: 273)
Name: NF6594_high_60
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_60 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 2193408 - 2193645
Alignment:
| Q |
19 |
ccttggccatgctggaaatcgaaagcagtataacaatcttaagtataaaaatatcaattactcatgtcagatagctaaaaggctcgttacaacttaccta |
118 |
Q |
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| T |
2193408 |
ccttggccatgctggaaatcgaaagcagtataacaatcttaagtataaaaatatcaattactcatgccagatagctaaaaggctcgttacaacttaccta |
2193507 |
T |
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| Q |
119 |
acaacaaaataaaatgcctaaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatga |
218 |
Q |
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| T |
2193508 |
acaacaaaataaaatgcctaaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatga |
2193607 |
T |
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| Q |
219 |
aaaaactcttatcataatccagaaattcaacatcaact |
256 |
Q |
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| T |
2193608 |
aaaaactcttatcataatccagaaattcaacatcaact |
2193645 |
T |
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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 258551 - 258496
Alignment:
| Q |
137 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
192 |
Q |
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| T |
258551 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
258496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 14174513 - 14174568
Alignment:
| Q |
137 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
192 |
Q |
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| T |
14174513 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
14174568 |
T |
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