View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_7 (Length: 640)
Name: NF6594_high_7
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 282 - 623
Target Start/End: Original strand, 2491100 - 2491444
Alignment:
| Q |
282 |
attaggtggatcttatcatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
381 |
Q |
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| T |
2491100 |
attaggtggatcttattatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
2491199 |
T |
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| Q |
382 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagccttaaacaatcatgtctaccacataaacatgttcc |
481 |
Q |
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| T |
2491200 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
2491299 |
T |
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| Q |
482 |
aatggcgaaacacaacaaataacagttagtt---aagcttaaaaacacagaaattcccaatgggaattgctctttgcattttatgtctctgtactaggtc |
578 |
Q |
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| T |
2491300 |
aatggcgaaacacaacaaataacagttagttaagaagcttaaaaacacagaaactcccaatgggaattgctcttagcattttatgtctctgaactaggtc |
2491399 |
T |
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| Q |
579 |
gcatatccggggttcctttcctaattcaatttgtcttatgtttct |
623 |
Q |
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| T |
2491400 |
gcatatccggggttcctttcctaattcaatttgtcttatgtttct |
2491444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 2490809 - 2491069
Alignment:
| Q |
1 |
gctgattgctatatttgttttcgacagcagaaaaagaagaaagatgccgaaggacaaaatagccaagatgctcaggatgcgaaagaggaggttgagcagg |
100 |
Q |
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| T |
2490809 |
gctgattgctatatttgttttcggcagcagaaaaagaagaaagatgccgaaggacaaaatagccaagatgctcaggatgcgaaagaggaagttgagcagg |
2490908 |
T |
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| Q |
101 |
aaagagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattata |
200 |
Q |
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| T |
2490909 |
aaagagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattata |
2491008 |
T |
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| Q |
201 |
gtaatccggtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
261 |
Q |
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| T |
2491009 |
gtaatccggtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
2491069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 2491066 - 2491096
Alignment:
| Q |
225 |
ttaatctgcatttgagcctctctaatgatat |
255 |
Q |
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| T |
2491066 |
ttaatctgcatttgagcctctctaatgatat |
2491096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 41589219 - 41589158
Alignment:
| Q |
100 |
gaaagagttattacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggt |
161 |
Q |
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| T |
41589219 |
gaaagagttattacccttaggccattgaatatgcaggatttcaaagaggccaagaatcaggt |
41589158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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