View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_high_76 (Length: 250)
Name: NF6594_high_76
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_high_76 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39027341 - 39027580
Alignment:
| Q |
1 |
ttggtgacaaattacacatgctctgcctctgctttgataaaggtaaatgtaaaatggatgggtgactattctgtcactacaatcatacttttaataattg |
100 |
Q |
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| T |
39027341 |
ttggtgacaaattacacatgctctgcctctgctttgataaaggtaaatgtaaaatggatgggtgactattctgtcactacaatcatacttttaataattg |
39027440 |
T |
|
| Q |
101 |
attgattgattggatattcaatatataaattatgtgttaaattttagaaaaa-tgatatttttacaagcattttatgacaactgttcgacaactcnnnnn |
199 |
Q |
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| T |
39027441 |
attgattgattggatattcaatatataaattatgtattatattttagaaaaattga----cgtacaaccattttgtgataatttttcgacaactcttcta |
39027536 |
T |
|
| Q |
200 |
nnaatactcacattaaggttttattctctctctatcttcttctc |
243 |
Q |
| |
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| T |
39027537 |
ttaatactcacattaagtttttattttctctctttctttttctc |
39027580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 39029143 - 39029179
Alignment:
| Q |
103 |
tgattgattggatattcaatatataaattatgtgtta |
139 |
Q |
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| T |
39029143 |
tgattgattggatattcaatatataaattatgtgtta |
39029179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 26000550 - 26000584
Alignment:
| Q |
148 |
aaaaatgatatttttacaagcattttatgacaact |
182 |
Q |
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| T |
26000550 |
aaaaatgatatttttacaaccattttatgacaact |
26000584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 5742672 - 5742632
Alignment:
| Q |
203 |
atactcacattaaggttttattctctctctatcttcttctc |
243 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| ||||| |
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|
| T |
5742672 |
atactcacattatgtttttattctctctctatctttttctc |
5742632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 30974057 - 30974013
Alignment:
| Q |
150 |
aaatgatatttttacaagcattttatgacaactgttcgacaactc |
194 |
Q |
| |
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| T |
30974057 |
aaatgatatttttacaatcattttatgacaactttttgacaactc |
30974013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 50652381 - 50652423
Alignment:
| Q |
140 |
aattttagaaaaatgatatttttacaagcattttatgacaact |
182 |
Q |
| |
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||||||||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
50652381 |
aattttagagaaatgatatttgtacaaccattttatgacaact |
50652423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 22692079 - 22692119
Alignment:
| Q |
142 |
ttttagaaaaatgatatttttacaagcattttatgacaact |
182 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
22692079 |
ttttagagaaatgatatttgtacaaccattttatgacaact |
22692119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 14426947 - 14426995
Alignment:
| Q |
146 |
agaaaaatgatatttttacaagcattttatgacaactgttcgacaactc |
194 |
Q |
| |
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| T |
14426947 |
agaaaaatgatatttgtacaatcattttgtgataactgttggacaactc |
14426995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 30530651 - 30530599
Alignment:
| Q |
141 |
attttagaaaaatgatatttttacaagcattttatgacaactgttcgacaact |
193 |
Q |
| |
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|||||||| ||||||||||| ||||| |||||| |||||||| || ||||||| |
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|
| T |
30530651 |
attttagagaaatgatatttatacaaccattttgtgacaacttttagacaact |
30530599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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