View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_1 (Length: 781)

Name: NF6594_low_1
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_1
NF6594_low_1
[»] chr7 (1 HSPs)
chr7 (9-763)||(2032143-2032908)


Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 9 - 763
Target Start/End: Original strand, 2032143 - 2032908
Alignment:
Q  9 agtagcataggacacaatttagatccgtaattaataaaatttaatnnnnnnnnncttatacaaaagtctaatacttttaaaggaaaatacattaataatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  2032143 agtagcataggacacaatttagatccgtaattaataaaatttaataaaaaaaaacttatacaaaagtctaatacttttaaaggaaaatacattaataatt 2032242  T
Q  109 caacattaattaattataacctctacttagaaaaagatatttgtgattaaaataaaaattgtatttgtgctagtaatcttatcgtgtgagttaattcttt 208  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  2032243 caacattaatt---tataacctctacttagaaaaagatatttgtgattaaaataaaaattttatttgtgctagtaatcttatcgtgtaagttaattcttt 2032339  T
Q  209 ttt-gtaataatctctattaatttcataaatgattaaactccnnnnnnnnnnnn--ggtacaaaattattaaactcctttattgatgtgctgctatttta 305  Q
    ||| ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||    
T  2032340 ttttgtaataatctctattaatttcataaatgattaaactccttttttttttttttggtacaaaattattaaactcctttattgatgtgctgctatttta 2032439  T
Q  306 ccttatgattatcaatcttaaccctagtctgacgaaggaaatatttcggttgattaattnnnnnnnnttatcggagtttaaagtagaagtcccaagttcg 405  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||        ||||||||||||||| |||| |||||| |||||    
T  2032440 ccttatgattatcaatcttaaccctagtctaacgaaggaaataattcggttgatgaattaagaaacattatcggagtttaaaatagaggtcccaggttcg 2032539  T
Q  406 atccctaaaactaatttaaccaccggtttaataatcaaactgaggtaaagcgacaataatacatttacttgtatacacacagcaacagtaatttctaggg 505  Q
    ||| | ||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2032540 atctcaaaaacaaatttaaccaccgatttaataatcaaactgagataaagctacaataatacatttacttgtatacacacagcaacactaatttctaggg 2032639  T
Q  506 tgcctctnnnnnnncact-aattttttagggtgataacatattttcttatcattaatcaatactatttatacttcactgtgtaaagtgttatattttcaa 604  Q
    |||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2032640 tgcctctaaaaaaacactaaattttttagggtgataacatattttcttatcattaatcaatactatttatacttcactgtgtaaagtgttatattttcaa 2032739  T
Q  605 gcaatgtaatg----------taactgtttctagcatatatatttaacacaacccttcaaagtgctaagaggaagtagaaagccaattccactggcaagg 694  Q
    |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2032740 gcaatgtaatgtaactgtttataactgtttctagcatatatatttaacacaacccttcaaagtgctaagaggaagtagaaagccaattccaccggcaagg 2032839  T
Q  695 caatgagcattcctaacaagatcctattaacaagaaacaagaacagcatcaaatcttaagcaatgtaaa 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2032840 caatgagcattcctaacaagatcctattaacaagaaacaagaacagcatcaaatcttaaacaatgtaaa 2032908  T

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