View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_10 (Length: 622)

Name: NF6594_low_10
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_10
NF6594_low_10
[»] chr7 (28 HSPs)
chr7 (122-603)||(41866878-41867364)
chr7 (6-112)||(31513287-31513393)
chr7 (6-112)||(40236919-40237025)
chr7 (6-111)||(31408627-31408732)
chr7 (6-112)||(27535225-27535331)
chr7 (6-112)||(33384870-33384977)
chr7 (13-110)||(10573751-10573848)
chr7 (13-112)||(24280597-24280696)
chr7 (13-112)||(24001013-24001112)
chr7 (13-112)||(35069721-35069820)
chr7 (13-112)||(42538432-42538531)
chr7 (26-112)||(9216302-9216387)
chr7 (13-110)||(4638200-4638297)
chr7 (26-110)||(44326180-44326264)
chr7 (13-112)||(5015395-5015494)
chr7 (13-112)||(41861674-41861775)
chr7 (26-112)||(42972852-42972938)
chr7 (27-112)||(43317443-43317528)
chr7 (13-110)||(43343625-43343722)
chr7 (13-110)||(44416935-44417032)
chr7 (13-112)||(5810925-5811024)
chr7 (26-109)||(26898416-26898499)
chr7 (45-112)||(39998408-39998475)
chr7 (27-112)||(5194246-5194331)
chr7 (13-82)||(32029818-32029887)
chr7 (13-92)||(38160580-38160659)
chr7 (27-112)||(45326020-45326105)
chr7 (13-110)||(16180358-16180454)
[»] chr5 (13 HSPs)
chr5 (6-112)||(32473388-32473494)
chr5 (6-112)||(17208074-17208180)
chr5 (6-112)||(30622713-30622818)
chr5 (13-112)||(7617133-7617232)
chr5 (13-112)||(41334664-41334763)
chr5 (13-112)||(2614650-2614749)
chr5 (13-112)||(22512305-22512404)
chr5 (13-110)||(5256997-5257094)
chr5 (13-112)||(18033982-18034081)
chr5 (27-112)||(38470579-38470664)
chr5 (13-112)||(33801469-33801568)
chr5 (13-104)||(39122434-39122524)
chr5 (40-112)||(33855071-33855143)
[»] chr1 (25 HSPs)
chr1 (6-112)||(48119628-48119734)
chr1 (6-112)||(35003294-35003400)
chr1 (6-112)||(44112677-44112783)
chr1 (6-112)||(38335918-38336024)
chr1 (6-112)||(46168383-46168489)
chr1 (6-112)||(38113189-38113295)
chr1 (6-112)||(41065153-41065259)
chr1 (6-112)||(45427739-45427845)
chr1 (6-112)||(45639726-45639832)
chr1 (6-112)||(45705825-45705931)
chr1 (6-112)||(35000107-35000213)
chr1 (6-112)||(26585462-26585568)
chr1 (13-112)||(43571087-43571186)
chr1 (13-112)||(5489776-5489875)
chr1 (55-112)||(14427347-14427404)
chr1 (13-112)||(37814778-37814877)
chr1 (13-112)||(48498963-48499062)
chr1 (13-112)||(23989524-23989624)
chr1 (13-112)||(750306-750405)
chr1 (26-110)||(2497576-2497660)
chr1 (433-481)||(41493144-41493192)
chr1 (13-112)||(24769500-24769599)
chr1 (26-112)||(50448274-50448360)
chr1 (13-70)||(4401370-4401427)
chr1 (13-110)||(7447828-7447924)
[»] chr8 (27 HSPs)
chr8 (6-112)||(35181516-35181622)
chr8 (6-112)||(34304788-34304894)
chr8 (6-112)||(16603620-16603726)
chr8 (6-112)||(18066712-18066818)
chr8 (6-110)||(33629987-33630091)
chr8 (6-111)||(16358827-16358933)
chr8 (6-112)||(19386559-19386670)
chr8 (13-112)||(1375542-1375641)
chr8 (13-112)||(11582766-11582865)
chr8 (13-112)||(29705362-29705461)
chr8 (13-112)||(36743484-36743583)
chr8 (13-110)||(29800951-29801048)
chr8 (13-110)||(42295197-42295294)
chr8 (26-110)||(20148762-20148846)
chr8 (26-110)||(30912576-30912660)
chr8 (6-71)||(10678146-10678211)
chr8 (13-110)||(26125637-26125734)
chr8 (26-111)||(45397317-45397402)
chr8 (26-110)||(42699259-42699343)
chr8 (13-112)||(2546996-2547095)
chr8 (13-112)||(5754903-5755002)
chr8 (13-112)||(30660743-30660842)
chr8 (13-104)||(31384672-31384763)
chr8 (13-112)||(42197436-42197535)
chr8 (13-62)||(32328818-32328867)
chr8 (13-112)||(2165964-2166063)
chr8 (76-112)||(10678204-10678240)
[»] chr4 (38 HSPs)
chr4 (6-112)||(17619146-17619252)
chr4 (6-112)||(711960-712066)
chr4 (6-112)||(55272370-55272476)
chr4 (6-112)||(32728357-32728463)
chr4 (7-110)||(3756242-3756344)
chr4 (6-112)||(48435573-48435679)
chr4 (6-110)||(35037007-35037111)
chr4 (6-112)||(960864-960970)
chr4 (6-112)||(46827700-46827806)
chr4 (6-110)||(38851515-38851619)
chr4 (13-112)||(28988473-28988572)
chr4 (32-112)||(49229684-49229764)
chr4 (13-112)||(33703141-33703240)
chr4 (26-112)||(1771280-1771366)
chr4 (26-112)||(27864564-27864650)
chr4 (26-112)||(28982836-28982922)
chr4 (26-112)||(55966360-55966446)
chr4 (13-110)||(27893843-27893940)
chr4 (13-112)||(27550309-27550408)
chr4 (13-111)||(41878407-41878505)
chr4 (6-79)||(19879987-19880060)
chr4 (27-112)||(25051693-25051778)
chr4 (26-110)||(43514700-43514784)
chr4 (13-112)||(23035980-23036079)
chr4 (13-112)||(27316714-27316813)
chr4 (13-112)||(45490314-45490413)
chr4 (18-112)||(48463456-48463550)
chr4 (6-71)||(36004110-36004175)
chr4 (13-110)||(41327544-41327641)
chr4 (13-112)||(35017733-35017831)
chr4 (13-112)||(41847971-41848070)
chr4 (13-110)||(39631102-39631200)
chr4 (13-110)||(43949802-43949900)
chr4 (27-112)||(12496956-12497041)
chr4 (13-112)||(21687006-21687105)
chr4 (13-58)||(31680956-31681001)
chr4 (13-109)||(23204779-23204875)
chr4 (76-112)||(36004168-36004204)
[»] chr2 (29 HSPs)
chr2 (6-112)||(43114557-43114663)
chr2 (6-110)||(11825648-11825752)
chr2 (6-110)||(41281968-41282072)
chr2 (6-112)||(12415454-12415560)
chr2 (6-112)||(12427514-12427620)
chr2 (6-112)||(16803968-16804074)
chr2 (6-112)||(16843250-16843356)
chr2 (6-112)||(18491705-18491811)
chr2 (6-112)||(966828-966934)
chr2 (6-88)||(4451944-4452026)
chr2 (6-112)||(34895735-34895841)
chr2 (6-110)||(4299414-4299518)
chr2 (27-110)||(6518484-6518566)
chr2 (13-112)||(16096747-16096846)
chr2 (13-112)||(1750414-1750513)
chr2 (13-112)||(30838632-30838731)
chr2 (6-112)||(14285676-14285782)
chr2 (13-111)||(34817777-34817875)
chr2 (6-94)||(12531657-12531744)
chr2 (13-112)||(4764727-4764826)
chr2 (13-112)||(12302254-12302353)
chr2 (13-112)||(13780736-13780835)
chr2 (13-111)||(19047158-19047256)
chr2 (16-112)||(42026767-42026865)
chr2 (13-112)||(43335764-43335863)
chr2 (13-110)||(43490402-43490499)
chr2 (27-110)||(8896598-8896681)
chr2 (33-110)||(33229303-33229381)
chr2 (26-70)||(42849872-42849916)
[»] chr3 (24 HSPs)
chr3 (6-112)||(4190259-4190365)
chr3 (6-112)||(9434124-9434230)
chr3 (6-112)||(10457886-10457992)
chr3 (7-112)||(52627972-52628077)
chr3 (6-112)||(34791829-34791935)
chr3 (6-112)||(51757593-51757699)
chr3 (6-112)||(25996268-25996374)
chr3 (13-110)||(27748565-27748662)
chr3 (13-112)||(36150130-36150229)
chr3 (26-112)||(42100688-42100774)
chr3 (26-112)||(45126942-45127028)
chr3 (13-112)||(25413681-25413780)
chr3 (13-112)||(40808865-40808964)
chr3 (13-112)||(46941053-46941152)
chr3 (13-111)||(54237097-54237195)
chr3 (13-74)||(51249346-51249407)
chr3 (13-112)||(24688403-24688502)
chr3 (13-112)||(54246149-54246248)
chr3 (13-111)||(40480750-40480848)
chr3 (13-111)||(42394420-42394518)
chr3 (13-112)||(47191027-47191125)
chr3 (13-110)||(53581859-53581956)
chr3 (12-112)||(53273684-53273784)
chr3 (27-108)||(29558249-29558330)
[»] scaffold0003 (1 HSPs)
scaffold0003 (6-110)||(45713-45817)
[»] chr6 (18 HSPs)
chr6 (6-110)||(27441544-27441648)
chr6 (6-112)||(33242403-33242509)
chr6 (12-112)||(33253913-33254013)
chr6 (6-112)||(31109216-31109322)
chr6 (13-112)||(13743222-13743321)
chr6 (13-112)||(13748722-13748821)
chr6 (13-112)||(26670010-26670109)
chr6 (13-112)||(30014343-30014442)
chr6 (27-112)||(7273350-7273435)
chr6 (26-110)||(24204001-24204085)
chr6 (13-112)||(3213400-3213499)
chr6 (13-112)||(7292747-7292846)
chr6 (13-112)||(9698334-9698433)
chr6 (13-112)||(26466799-26466898)
chr6 (13-112)||(21279929-21280028)
chr6 (27-110)||(30735984-30736067)
chr6 (26-112)||(7367549-7367635)
chr6 (13-112)||(21293678-21293777)
[»] scaffold0100 (1 HSPs)
scaffold0100 (6-112)||(35450-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (13-112)||(685-784)
[»] scaffold0385 (1 HSPs)
scaffold0385 (13-112)||(11251-11350)
[»] scaffold0038 (1 HSPs)
scaffold0038 (13-111)||(112656-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (13-112)||(14189-14288)
scaffold0187 (13-112)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (27-112)||(23436-23521)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 122 - 603
Target Start/End: Complemental strand, 41867364 - 41866878
Alignment:
Q  122 tactttcttcaatctttgaatatttgtgattat----atctggattaagacattaatatttatctttatattttgattaagacacgaatatttatatgta 217  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867364 tactttcttcaatctttgaatatttgtgattatgcatatctggattaagacattaatatttatctttatattttgattaagacacgaatatttatatgta 41867265  T
Q  218 tatttggactaagacatgaatagtatcttatggaatatttggcttaagacatgaatatgaatatttatttattgttatgcttggactaagacatgaatac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867264 tatttggactaagacatgaatagtatcttatggaatatttggcttaagacatgaatatgaatatttatttattgttatgcttggactaagacatgaatac 41867165  T
Q  318 ttattaatgttgttattttttataggagattaatgttattattattgtggctgtttgaactacttatgatttcaatttttcttatagtttgttttgaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867164 ttattaatgttgttattttttataggagattaatgttattattattgtggtagtttgaactacttatgatttcaatttttcttatagtttgttttgaatt 41867065  T
Q  418 ttttattatattgggttaactc--aaataaaaactaaaactcaactaagaactgaatttcaaaactaaaattagttttgatttttaaaattttgaaaaga 515  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41867064 ttttattatattgggttgactcaaaaataaaaactaaaactcaactaagaactgaatttcaaaactaaaattagttttga-ttttaaaattttgaaaaga 41866966  T
Q  516 ttaaagtgagaatcatccttaatgaagcctagttaataccaaagcctagttaaaattttactaattactctgaattataccaaagttt 603  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41866965 ttaaagtgagaatcatccttactgaagcctagttaataccaaagcctagttaaaattttactaattactctgaataataccaaagttt 41866878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 31513393 - 31513287
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||| | |||||||||||||    
T  31513393 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaac 31513294  T
Q  106 attttcc 112  Q
    |||||||    
T  31513293 attttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 40237025 - 40236919
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||| |||||| |||||| ||||||||||| |||||||||||||||    
T  40237025 gagatgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaac 40236926  T
Q  106 attttcc 112  Q
    |||||||    
T  40236925 attttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 31408627 - 31408732
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| | |||| ||||| |||||||||||| |||||||||||||||    
T  31408627 gagatgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaac 31408726  T
Q  106 attttc 111  Q
    ||||||    
T  31408727 attttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 27535225 - 27535331
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  |||  ||||  ||||| ||||| |||||||||||| |||||||||||||||    
T  27535225 gagatgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaac 27535324  T
Q  106 attttcc 112  Q
    |||||||    
T  27535325 attttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 33384977 - 33384870
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataata-gggtgtatgattaaggggtgttcatgtaa 104  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||  || || |||| ||||||||||||||  | |||||||||||    
T  33384977 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaa 33384878  T
Q  105 cattttcc 112  Q
    ||||||||    
T  33384877 cattttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 10573848 - 10573751
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | |||||||||||||||||||||||||| |||||| |||| |||||| |||||| ||||||| ||| ||||||| ||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24280597 - 24280696
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||| |  |||||||||||||||||||||||||  ||| |||||| | |||| |||||||||||||| ||| ||||||||| ||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24001013 - 24001112
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 35069820 - 35069721
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| || ||| | ||||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 42538432 - 42538531
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 9216387 - 9216302
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||| |||||| | || || ||| ||||||||||||||||||||||    
T  9216387 gttgtgagatgaacttaccaaaatatctctaatgcatg-ggtgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 4638200 - 4638297
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||||| ||||||||||||| |||||||||||||| ||||  ||| |||||| ||| | |||||||| |||  |||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 44326264 - 44326180
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||| ||| || ||||||| ||| ||||||| ||||||||||||    
T  44326264 gttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5015494 - 5015395
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| | |||||  | ||| | ||||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 41861775 - 41861674
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatcccta--atgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | |||||||||| || ||||||||||||| |||  || |||  |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T
Q  111 cc 112  Q
    ||    
T  41861675 cc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 42972938 - 42972852
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| ||| | ||||| || ||| || |||||| ||||||||||||    
T  42972938 gttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 43317528 - 43317443
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||||| |||||||||||||| ||||  | |||| |||  ||||||||| |||  |||||||||||||||||||||    
T  43317528 ttgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 43343625 - 43343722
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||| |||||||||||  | |||  | |||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 44416935 - 44417032
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||| |||||||||||  | |||  | |||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 5810925 - 5811024
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||| |||||||||||||||  ||  |||||| ||| ||||||| || ||| ||||| ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 26898416 - 26898499
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattt 109  Q
    ||||| ||||||| ||||||||||||||||||| ||||   |||| ||| |||||||||| |||  ||||||||||||||||||    
T  26898416 gttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  45 aaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||| |||| |||||| |||||| |||||||||||   ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 5194246 - 5194331
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||||| |||||||||| |||  |||  |||||| |||  ||||||||| |||  |||||||||||||||||||||    
T  5194246 ttgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 32029818 - 32029887
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgta 82  Q
    |||| ||||| | ||||| ||||||||||||||||||||||||||| |||| |||||| ||| |||||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgta 32029887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 38160580 - 38160659
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggg 92  Q
    |||| ||||| ||||||||||||||| |||| |||||||||||||| |||| |||||| ||| | ||||| || ||||||    
T  38160580 aagataaagtgtagttgtgagatgaagttactaaaatatccctaatacatggggtgtacaatggagtgtaagaataaggg 38160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 45326105 - 45326020
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||| |||||||||||||||||||  ||| |||||| |||  | ||||||| |||  |||||| |||||||| |||||    
T  45326105 ttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 16180358 - 16180454
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||||||||||||||||   |||| | || |||||| ||| ||||||| || |||  |||||| ||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 32473388 - 32473494
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  32473388 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaac 32473487  T
Q  106 attttcc 112  Q
    |||||||    
T  32473488 attttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 17208180 - 17208074
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||| ||||  |||||||||||| ||||||||| |||||    
T  17208180 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaac 17208081  T
Q  106 attttcc 112  Q
    |||||||    
T  17208080 attttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 30622713 - 30622818
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||  || |||||||||||||||||| || ||||||||||||    
T  30622713 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatg-ggcttacaatagggtgtatgattaaaggatgttcatgtaac 30622811  T
Q  106 attttcc 112  Q
    |||||||    
T  30622812 attttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 7617232 - 7617133
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||||||| | |||||||| ||| ||||||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 41334664 - 41334763
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  ||||||||||  ||||||||| ||| ||||||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 2614650 - 2614749
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 22512404 - 22512305
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| ||||  ||||| ||| | ||||| || ||| ||||||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 5257094 - 5256997
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||| ||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 18034081 - 18033982
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  |||||| ||| | ||||| || ||| ||||||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 38470664 - 38470579
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||| |||||||||||||||||||| |||| |||| |||||| ||| |  ||||||| ||| ||||||| ||||||||||||||    
T  38470664 ttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 33801568 - 33801469
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| ||||  ||||| ||| |||||||  | ||| || |||||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 39122434 - 39122524
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaa 104  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||| |||| ||||| ||||  | ||||||| |||  |||||||||||||    
T  39122434 aagataaagtgtagttgtgagatgaatttaccaaaatattcctaatacatg-ggtgtctaattagatgtatgaataaaaggtgttcatgtaa 39122524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 33855071 - 33855143
Alignment:
Q  40 ttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||| | |||||| |||| |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 48119734 - 48119628
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  48119734 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 48119635  T
Q  106 attttcc 112  Q
    |||||||    
T  48119634 attttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 35003400 - 35003294
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| |||||||||||||||    
T  35003400 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35003301  T
Q  106 attttcc 112  Q
    |||||||    
T  35003300 attttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 44112783 - 44112677
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  44112783 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 44112684  T
Q  106 attttcc 112  Q
    |||||||    
T  44112683 attttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 38336024 - 38335918
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||| |||| ||||||||||||| |||||||||||||||    
T  38336024 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaac 38335925  T
Q  106 attttcc 112  Q
    |||||||    
T  38335924 attttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 46168489 - 46168383
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||| |||||| | ||||||||| |||||||||||||||    
T  46168489 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaac 46168390  T
Q  106 attttcc 112  Q
    |||||||    
T  46168389 attttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 38113189 - 38113295
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||| |||||| |||||||||||||||||| |||||||||| ||||    
T  38113189 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataac 38113288  T
Q  106 attttcc 112  Q
    |||||||    
T  38113289 attttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 41065259 - 41065153
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||  |||||||||||| |||||| || ||||||||||||||| |||||||||||||||    
T  41065259 gagaggaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaac 41065160  T
Q  106 attttcc 112  Q
    |||||||    
T  41065159 attttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 45427739 - 45427845
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  ||||| ||||||||||||||||||  ||| ||||||||||    
T  45427739 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaac 45427838  T
Q  106 attttcc 112  Q
    |||||||    
T  45427839 attttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 45639726 - 45639832
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||| |||||| |||||| ||||||||||| | |||||||||||||    
T  45639726 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaac 45639825  T
Q  106 attttcc 112  Q
    |||||||    
T  45639826 attttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 45705931 - 45705825
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||  ||||| |||||  ||||||||||| |||||||||| ||||    
T  45705931 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataac 45705832  T
Q  106 attttcc 112  Q
    |||||||    
T  45705831 attttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 35000107 - 35000213
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||| |||||| |||||| |||||||| ||||  || || ||||| ||||||||||||  ||||||||||||||    
T  35000107 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaac 35000206  T
Q  106 attttcc 112  Q
    |||||||    
T  35000207 attttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 26585568 - 26585462
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||| ||||||||||||| ||||||||| ||||||||| |||||| ||||  |||||||||||| |  ||||||| ||||    
T  26585568 gagatgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaac 26585469  T
Q  106 attttcc 112  Q
    |||||||    
T  26585468 attttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 43571087 - 43571186
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5489875 - 5489776
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  55 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 37814877 - 37814778
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||| |||||||||||||||||||| |||| |||| |||||| |||  | ||||||| ||| ||||||| ||||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 48498963 - 48499062
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| | |||||  | ||| | ||||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 23989524 - 23989624
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatg-attaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||| |||  ||| || ||| | ||||||| || || |||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttc 23989623  T
Q  112 c 112  Q
    |    
T  23989624 c 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 750306 - 750405
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||| ||||||||||||| |||||||||||| || |||| |||||| ||| ||||||| ||   | ||||||||| ||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 2497576 - 2497660
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| |||||||||||||| ||||  ||| |||||| ||| |  ||||||| |||  |||||| ||||||||||||    
T  2497576 gttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 41493144 - 41493192
Alignment:
Q  433 ttaactcaaataaaaactaaaactcaactaagaactgaatttcaaaact 481  Q
    |||||||||||||||||| | |||||||| |||||| ||||||||||||    
T  41493144 ttaactcaaataaaaactgatactcaacttagaactaaatttcaaaact 41493192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24769500 - 24769599
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||| | ||| ||||||||||||||||||| |||| |||||| ||| | |||||  | |||  |||||||||| ||||||||||    
T  24769500 aagataaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 50448274 - 50448360
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||| ||||||| |||| |||||||||||||| |||  |||||| ||| | |||||  | ||| | ||||||||||||||||||||    
T  50448274 gttgtaagatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 50448360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 4401427 - 4401370
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgta 70  Q
    |||| ||||| | ||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgta 4401370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 7447924 - 7447828
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||| |||||||||  |||| |||| |||||| ||| || |||| || ||| || |||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatg-ggtgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 35181622 - 35181516
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  35181622 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35181523  T
Q  106 attttcc 112  Q
    |||||||    
T  35181522 attttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 34304894 - 34304788
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| || ||||||||||||    
T  34304894 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 34304795  T
Q  106 attttcc 112  Q
    |||||||    
T  34304794 attttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 16603620 - 16603726
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||||| |||||| ||||||||    
T  16603620 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaac 16603719  T
Q  106 attttcc 112  Q
    |||||||    
T  16603720 attttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 18066712 - 18066818
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||| | |||| |||||  ||||||||||| |||||||||||||||    
T  18066712 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaac 18066811  T
Q  106 attttcc 112  Q
    |||||||    
T  18066812 attttcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 33629987 - 33630091
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||  |||||| |||  ||||||||||||| |||||||| ||||||    
T  33629987 gagatgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaac 33630086  T
Q  106 atttt 110  Q
    |||||    
T  33630087 atttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 16358827 - 16358933
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttc-atgtaa 104  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||| | ||||||||| | |||| |||||||||||||||||| |||| ||| ||||||    
T  16358827 gagatgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaa 16358926  T
Q  105 cattttc 111  Q
    |||||||    
T  16358927 cattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 19386559 - 19386670
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatg-----tggtgtataatagggtgtatgattaaggggtgttcat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||         |||||||||||||||||||||| ||||||||||    
T  19386559 gagatgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtgttcat 19386658  T
Q  101 gtaacattttcc 112  Q
    ||||||||||||    
T  19386659 gtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 1375641 - 1375542
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||  ||| |||||| ||| |||||||||| |||  ||||||||||||| |||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 11582865 - 11582766
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 29705461 - 29705362
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||| ||| |||||||  | ||| ||||||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 36743484 - 36743583
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 29800951 - 29801048
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||| ||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 42295294 - 42295197
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| ||||  ||||| |||  |||||| || ||| ||||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 20148846 - 20148762
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||| ||| || ||||||| ||| ||||||| ||||||||||||    
T  20148846 gttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 30912576 - 30912660
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| ||||||||||| ||||||| ||||  ||||| ||| ||||||| || ||| ||||||||||||||||||||    
T  30912576 gttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 10678146 - 10678211
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtat 71  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||  ||| |||||||    
T  10678146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtat 10678211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 26125734 - 26125637
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| |  ||||||| ||| ||||||| ||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 45397402 - 45397317
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    ||||||||||||| |||| |||||||||||||| |||  |||||| ||| ||||||| || ||| ||||||||| |||||||||||    
T  45397402 gttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 42699343 - 42699259
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| |||| ||||||||| |||| |||  |||||| ||| ||||||| || ||| ||||||||||||||||||||    
T  42699343 gttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 2547095 - 2546996
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||| |||||| ||| | |||||  | ||| | ||||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5755002 - 5754903
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||  ||| | |||| ||| || |||| || |||  |||||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 30660743 - 30660842
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||| ||||||| ||||||||||||||||||| |||  |||||| ||| || ||||  | ||| ||||||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 31384763 - 31384672
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaa 104  Q
    |||| ||||| | ||||||||||||| |||||||||||| |||||| |||| |||||| |||||  |||| || ||| ||||||||||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 42197436 - 42197535
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||   ||||  ||| ||||||| || |||  |||||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 32328818 - 32328867
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcat 62  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  32328818 aagagaaagtatagttgtgagataaacttaccaaaatattcctaatgcat 32328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 2165964 - 2166063
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||| ||||||||| ||||||||||||| ||||| |||| ||| || ||| ||||||| || |||  ||||||||||||| |||||||    
T  2165964 aagataaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 10678204 - 10678240
Alignment:
Q  76 gggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||| |||| |||||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 17619146 - 17619252
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||  ||||||||||||||    
T  17619146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 17619245  T
Q  106 attttcc 112  Q
    |||||||    
T  17619246 attttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 712066 - 711960
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||  |||||| |||||||||||||||||| |||||||||||||||    
T  712066 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaac 711967  T
Q  106 attttcc 112  Q
    |||||||    
T  711966 attttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 55272370 - 55272476
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||| || ||||||||||||    
T  55272370 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaac 55272469  T
Q  106 attttcc 112  Q
    |||||||    
T  55272470 attttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 32728463 - 32728357
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| ||| ||||||||| |||||| |||||||||||||||||| || ||||||||||||    
T  32728463 gagatgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 32728364  T
Q  106 attttcc 112  Q
    |||||||    
T  32728363 attttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 3756242 - 3756344
Alignment:
Q  7 agatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaaca 106  Q
    |||||||||| |||||||  ||||||||| ||||||| ||||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  3756242 agatgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca 3756340  T
Q  107 tttt 110  Q
    ||||    
T  3756341 tttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 48435573 - 48435679
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||| |||||||  |||||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||||  ||||||||||||||    
T  48435573 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 48435672  T
Q  106 attttcc 112  Q
    | |||||    
T  48435673 actttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 35037111 - 35037007
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||| |||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||| |||| ||||| |||||||||    
T  35037111 gagaagaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaac 35037012  T
Q  106 atttt 110  Q
    |||||    
T  35037011 atttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 960864 - 960970
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||   || | |||||||||||||||||| ||||||||| ||  |||||| ||||| |||||||||||| |||||||||||||||    
T  960864 gagatgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaac 960963  T
Q  106 attttcc 112  Q
    |||||||    
T  960964 attttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 46827700 - 46827806
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||| |||  ||||||||| ||||||||||||  | | ||||||||  |||||| ||||| |||||||||||| |||||||||||||||    
T  46827700 gagatgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaac 46827799  T
Q  106 attttcc 112  Q
    |||||||    
T  46827800 attttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 38851619 - 38851515
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||  ||||| | || | ||||||||||| || | ||||||||||    
T  38851619 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaac 38851520  T
Q  106 atttt 110  Q
    |||||    
T  38851519 atttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 28988572 - 28988473
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||| | ||| ||||||||||||| |||||| |||||| |||||| |||||| |||  ||||||||| ||| ||||||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 49229684 - 49229764
Alignment:
Q  32 agatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||| ||||||| |||||||||  ||||| |||||||||||||||||| || ||||||| |||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 33703240 - 33703141
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||| | ||||  | ||| ||||||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 1771280 - 1771366
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||| ||||||||| ||||| |||| |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  1771280 gttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 27864650 - 27864564
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||| ||||||||||||||    
T  27864650 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 28982836 - 28982922
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| |||||||||||||||||||  ||| | |||| |||||||||||  | ||| ||||||||||||||||||||||    
T  28982836 gttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 55966360 - 55966446
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| | |||| ||| || ||||||| ||| ||||||| ||||||||||||||    
T  55966360 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 27893843 - 27893940
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||| ||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 27550408 - 27550309
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||| ||||||| ||||||||||||||||||| |||| |||||| ||| | |||||  | ||| ||||||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 41878505 - 41878407
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    ||||||| || | ||||||||||||| ||| |||||||||||||||| ||  |||||| |||  ||||||||| ||| | |||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 19880060 - 19879987
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggt 79  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||| ||||  ||| |||||| ||||||||    
T  19880060 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 25051778 - 25051693
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||| ||||||||||||||||||| |||  |||||| ||| ||||||| || ||| | |||||||||| |||||||||    
T  25051778 ttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 43514700 - 43514784
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| ||||||||||| ||||||| ||||  ||||| ||| | ||||| || ||| ||||||||||||||||||||    
T  43514700 gttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 23036079 - 23035980
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| ||||||||||||||  ||  |||||| ||||||||||| || ||| ||  ||||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 27316714 - 27316813
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||| ||||||||| |||||||||||||| |||| |||| ||||||||||  |||||| || ||| |||||||| | |||||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 45490314 - 45490413
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | |||||||||||||||||| ||| |||||||||| |||| |||||| ||| || ||||| | |||   ||||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 48463456 - 48463550
Alignment:
Q  18 aaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||| | |||| |||    ||||||| |||  |||||| ||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 36004110 - 36004175
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtat 71  Q
    ||||||||||||||||||| |||||||||| |||||| |||||| ||||||||  ||| |||||||    
T  36004110 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatatatggggtgtat 36004175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 41327544 - 41327641
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||||||||| | | |||||||||||||||||||||| ||| || |||||  |||||| ||| |||||| ||| ||| ||||||  ||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 35017831 - 35017733
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||||||||||||||| || |||| |||||| |||  | | || || ||| ||||||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatccct-atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 41848070 - 41847971
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||| | |||||| ||||||||| ||||||| || |||||||||| |||||| |||  ||||| |||  || || ||||| |||||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 39631200 - 39631102
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatg-attaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| | || || ||| ||||||||| ||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 43949802 - 43949900
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatg-attaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||| | | || || ||||||||||||| ||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 12497041 - 12496956
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||||| ||||||||||||| ||||| |||| | |||| ||| | ||||| || ||| |||||||||| |||||||||||    
T  12497041 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 21687105 - 21687006
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||||| ||| ||||||||| |||| |||||||  ||||| |||  | |||||||| |||||||  | ||| || |||||||||||||||||||    
T  21687105 aagataaagtatggttatgagatgaacttactaaaatatttctaatacataagatgtataatggggtgtaaaaataaaggatgttcatgtaacattttcc 21687006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 31681001 - 31680956
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaat 58  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 31680956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattt 109  Q
    |||| ||||| | ||||||| ||||| |||| |||||||||||||| |||  | |||| ||| || |||| || ||| | |||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  76 gggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||||| |||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 43114663 - 43114557
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  43114663 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 43114564  T
Q  106 attttcc 112  Q
    |||||||    
T  43114563 attttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 11825648 - 11825752
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  |||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  11825648 gagatgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 11825747  T
Q  106 atttt 110  Q
    |||||    
T  11825748 atttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 41281968 - 41282072
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  41281968 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 41282067  T
Q  106 atttt 110  Q
    |||||    
T  41282068 atttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 12415454 - 12415560
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||||||||||    
T  12415454 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12415553  T
Q  106 attttcc 112  Q
    |||||||    
T  12415554 attttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 12427514 - 12427620
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||||||||||    
T  12427514 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12427613  T
Q  106 attttcc 112  Q
    |||||||    
T  12427614 attttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 16804074 - 16803968
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||||||||    
T  16804074 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16803975  T
Q  106 attttcc 112  Q
    |||||||    
T  16803974 attttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 16843356 - 16843250
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||||||||    
T  16843356 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16843257  T
Q  106 attttcc 112  Q
    |||||||    
T  16843256 attttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 18491811 - 18491705
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||| |||||| |||||||||||||||||||||||| | | ||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  18491811 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 18491712  T
Q  106 attttcc 112  Q
    |||||||    
T  18491711 attttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 966828 - 966934
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||  | | ||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  966828 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 966927  T
Q  106 attttcc 112  Q
    |||||||    
T  966928 attttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 4451944 - 4452026
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgatta 88  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||    
T  4451944 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 34895735 - 34895841
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||| |||||||  |||||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||||  ||||||||||||||    
T  34895735 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 34895834  T
Q  106 attttcc 112  Q
    | |||||    
T  34895835 actttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 4299414 - 4299518
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||| |||||| ||||||  ||||||||||||||||||||||| ||  |||||||||  ||||| |||||||||||||||||| |||||||||| ||||    
T  4299414 gagattaaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataac 4299513  T
Q  106 atttt 110  Q
    |||||    
T  4299514 atttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 6518484 - 6518566
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||||||||||| |||||||||| ||||||||||||| |||||| ||||| ||||||||||||  |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaa-aggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 16096846 - 16096747
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | |||||||||| || | ||||||||||||||||| |||| |||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 1750513 - 1750414
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 30838731 - 30838632
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||| | ||||  | ||| ||||||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 14285782 - 14285676
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||   | |||||||||||||||||||||||  ||||  ||  |||||| |||||||||||||||||| |||||||  |||||     
T  14285782 gagatgaaagagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaat 14285683  T
Q  106 attttcc 112  Q
    |||||||    
T  14285682 attttcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 34817777 - 34817875
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||||||||| | |||||||||||||||||||||||| | | || |||||| |||||| |||  ||||| ||| ||| |||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 12531657 - 12531744
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggt 94  Q
    ||||||||||||||||||| |||||||||||||||||||||||   || |||||| || |||||| ||| |||||||||||||| ||||    
T  12531657 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 4764727 - 4764826
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||||||||||||||||   |||| |||| |||||| ||||||||||| || |||  |||||| ||||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 12302254 - 12302353
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  |||||| ||| |||||||  | ||| ||||||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 13780736 - 13780835
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||| ||| |||||| |||  ||||| ||| |||   ||||| ||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 19047256 - 19047158
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| |  |||| || ||| |||||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 42026865 - 42026767
Alignment:
Q  16 agaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaa--ggggtgttcatgtaacattttcc 112  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||  | | |||| ||| |  ||||||| |||   ||||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcc 42026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 43335764 - 43335863
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| |||| | |||| |||  |||||| || |||  | ||||||| |||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 43490402 - 43490499
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||| ||||||||| ||||||||||||||||||| |||   ||||| ||| || |||| || ||| ||||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 8896598 - 8896681
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||||||||||||||| |||| || ||  |||||| ||| |  ||| ||| ||| ||||||||||||||||||||    
T  8896598 ttgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 33229381 - 33229303
Alignment:
Q  33 gatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatg-attaaggggtgttcatgtaacatttt 110  Q
    |||||| ||||||||||||||||||| |||| |||||| |||  |||||| | || || ||||||||||||| ||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 42849872 - 42849916
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgta 70  Q
    ||||||||||||| ||| ||||||||||||||| |||| ||||||    
T  42849872 gttgtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 4190259 - 4190365
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||  |||||| |||||||||||||||||| |||||||||||||||    
T  4190259 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 4190358  T
Q  106 attttcc 112  Q
    |||||||    
T  4190359 attttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 9434230 - 9434124
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||    
T  9434230 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaac 9434131  T
Q  106 attttcc 112  Q
    |||||||    
T  9434130 attttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 10457886 - 10457992
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||  ||||||||||||||    
T  10457886 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 10457985  T
Q  106 attttcc 112  Q
    |||||||    
T  10457986 attttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 52627972 - 52628077
Alignment:
Q  7 agatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaaca 106  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||| ||||||||| ||||||    
T  52627972 agatgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaaca 52628071  T
Q  107 ttttcc 112  Q
    ||||||    
T  52628072 ttttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 34791935 - 34791829
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||  ||||| ||||||||||||| ||| || |||| ||||||||||||| |||||||||||||||    
T  34791935 gagatgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaac 34791836  T
Q  106 attttcc 112  Q
    |||||||    
T  34791835 attttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 51757699 - 51757593
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||| ||| ||||||||| |||||| |||||||||||||||||| ||||||| ||||||     
T  51757699 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaat 51757600  T
Q  106 attttcc 112  Q
    |||||||    
T  51757599 attttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 25996374 - 25996268
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||  ||| |||||| |||| | ||||||||||| |||||||||||||||    
T  25996374 gagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaac 25996275  T
Q  106 attttcc 112  Q
    |||||||    
T  25996274 attttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27748662 - 27748565
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||| |||  ||||||||||  ||||||||| |||  |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 36150229 - 36150130
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||||||||||||||| || |||  |||||||||| |||||||||| ||| |||| |||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 42100774 - 42100688
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  42100774 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 45126942 - 45127028
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| ||| ||||||| ||||||||||||||    
T  45126942 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 25413780 - 25413681
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 40808964 - 40808865
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| ||||||| || |||  |||||| ||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 46941152 - 46941053
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  | |||| || ||| ||||||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 54237195 - 54237097
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| |||||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 51249407 - 51249346
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataat 74  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataat 51249346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24688403 - 24688502
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| | |||||  | ||| ||||||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 54246149 - 54246248
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||| ||||| |||  |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 40480848 - 40480750
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  | |||| ||| |||  ||||| ||| |||||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 42394420 - 42394518
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| |  |||| || ||| |||||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 47191027 - 47191125
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||| ||||||||| ||||| |||| |||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacatg-ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 53581859 - 53581956
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||| ||||| | ||||||||||||| ||| ||||||||||||||| |||  | |||| ||| | |||||||| ||| | ||||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 53273684 - 53273784
Alignment:
Q  12 aaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||| |||| | |||| |||  ||| || || |||  | ||||||| ||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttc 53273783  T
Q  112 c 112  Q
    |    
T  53273784 c 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatt 108  Q
    |||||||||||||||||||| |||| ||||||  ||  |||||| |||  | ||||||| ||| |||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 45713 - 45817
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||  | |||| |||||||||||||||||| |||||||||||||||    
T  45713 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 45812  T
Q  106 atttt 110  Q
    |||||    
T  45813 atttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 27441648 - 27441544
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||  | |||| |||||||||||||||||| |||||||||||||||    
T  27441648 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 27441549  T
Q  106 atttt 110  Q
    |||||    
T  27441548 atttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 33242509 - 33242403
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||| |||| |||| |||||| |||| |||||||||||||  ||||||||||||||    
T  33242509 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaac 33242410  T
Q  106 attttcc 112  Q
    |||||||    
T  33242409 attttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 33254013 - 33253913
Alignment:
Q  12 aaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    ||||| |||||||  |||||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||||  ||||||||||||||||||||    
T  33254013 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttc 33253914  T
Q  112 c 112  Q
    |    
T  33253913 c 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 31109216 - 31109322
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||| | | || || || |||||||| ||||||||||||| |||||| |||||||||| || ||||||||||| |||||||||||||||    
T  31109216 gagatgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaac 31109315  T
Q  106 attttcc 112  Q
    |||||||    
T  31109316 attttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 13743222 - 13743321
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 13748722 - 13748821
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || ||||||| |||  |||||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 26670010 - 26670109
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 30014442 - 30014343
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||||| || |||| || ||| ||||||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 7273350 - 7273435
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||||||||||| ||||||||||||| ||||| |||| |||||| |||| |||||| || ||| ||||||||||||||||||||||    
T  7273350 ttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 24204001 - 24204085
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    ||||||||||||| ||||||||||||||||||| ||||  ||||| ||||||||||| || |||  |||||||||||||||||||    
T  24204001 gttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 3213499 - 3213400
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||||| ||||||| |||||||||||||||||||| |||| |||| |||||| |||  | ||||||| ||| ||||||| ||||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 7292846 - 7292747
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  ||||||||||  ||||||||| |||  ||||||| |||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 9698334 - 9698433
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||| || ||| ||||||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 26466898 - 26466799
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||| ||||||| ||||  ||||| ||| ||||||| || ||| ||||||| ||||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 21280028 - 21279929
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||| |||| | |||  ||| |  ||||  | ||| ||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 30736067 - 30735984
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 110  Q
    |||||||||||| ||||||||||||| ||||| |||| |||||| ||| ||||||| || |||   ||||||||||||||||||    
T  30736067 ttgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 7367635 - 7367549
Alignment:
Q  26 gttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    ||||||||||||| ||||||||||||||||||| |||| | |||| |||  ||||||||| |||  | ||||||| |||||||||||    
T  7367635 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 21293678 - 21293777
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||| |||||||||||||||||||| |||| |||| |||||| | |    ||||||| ||| ||||||| ||||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 35450 - 35556
Alignment:
Q  6 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaac 105  Q
    ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||| |||| |||||||||||||  |||||| |||||||    
T  35450 gagatgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaac 35549  T
Q  106 attttcc 112  Q
    |||||||    
T  35550 attttcc 35556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 784 - 685
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 11350 - 11251
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||  ||| |||||| ||| |||||||||| ||| | |||||||||| |||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 112754 - 112656
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 111  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||| |||  |||||| ||| |  |||| || ||| |||||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 14189 - 14288
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  | |||| ||| |||||||  | ||| ||||||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24517 - 24616
Alignment:
Q  13 aagagaaagtatagttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||| | ||||||||||||| |||| |||||||||||||| |||  | |||| ||| |||||||  | ||| ||||||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 23436 - 23521
Alignment:
Q  27 ttgtgagatgaatttaccaaaatatccctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 112  Q
    |||| ||||||| ||||||||||||| ||||| |||| | |||| ||| | ||||| || ||| |||||||||| |||||||||||    
T  23436 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University