View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_113 (Length: 208)
Name: NF6594_low_113
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5154950 - 5155148
Alignment:
| Q |
1 |
caaaagcttttcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
5154950 |
caaaagcttttcattatgtatattgttgaaggatttttgagatcaaaggagttggaggtcttagacctttcctataatgggctgaactgcaatatcataa |
5155049 |
T |
|
| Q |
101 |
caagtttgcatggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacccatcttcaattcttat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5155050 |
caagtttgcatggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacacatcttcaattcttat |
5155148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 5171544 - 5171735
Alignment:
| Q |
1 |
caaaagcttttcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5171544 |
caaaagcttttcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcccataatgagctaaactgcaatatcataa |
5171643 |
T |
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| Q |
101 |
caagtttgcatggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacccatcttcaa |
192 |
Q |
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| T |
5171644 |
caagtttgtatggtttcatatcattaaggagtttgattttgagagataacaagttcaattgttctctctccactttaggtacgcatcttcaa |
5171735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4844131 - 4843933
Alignment:
| Q |
1 |
caaaagcttttcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844131 |
caaaagcttttcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataa |
4844032 |
T |
|
| Q |
101 |
caagtttgcatggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacccatcttcaattcttat |
199 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| | | ||| | ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
4844031 |
caagtttgcatggtttcatatcattaaggagtttgattctaaatgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattat |
4843933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5194170 - 5194372
Alignment:
| Q |
1 |
caaaagcttttcattatgtatat----tgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatc |
96 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||| || |
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| T |
5194170 |
caaaagcttttcattatgtatatatattgttgaaggattttcgagatcaaaggagttggaagtcttagacctttcaggaaataggctaaattgcaacata |
5194269 |
T |
|
| Q |
97 |
ataacaagtttgcatggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacccatcttcaattct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5194270 |
ataacaagtttgcatggattcacatcattaaggagtttgattctgagttacaacaacttcaattgttctctctccactttaggtaaacatcttcaattct |
5194369 |
T |
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| Q |
197 |
tat |
199 |
Q |
| |
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||| |
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| T |
5194370 |
tat |
5194372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 5180987 - 5181175
Alignment:
| Q |
11 |
tcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataacaagtttgca |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||| || ||||| |||||| |||||||||| |
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| T |
5180987 |
tcattatgtatattgttcaaggattttcgagatcaaaggagttggaagtcttagacctttcaggaaataggctgaattgcaacatcatatcaagtttgca |
5181086 |
T |
|
| Q |
111 |
tggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacccatcttcaattcttat |
199 |
Q |
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|||||||||||||||||||||||||||||| || | ||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
5181087 |
tggattcacatcattaaggagtttgattctaagtgataacaagttcaattgttctttctccactttcggtacacatcttcaattcttat |
5181175 |
T |
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