View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_114 (Length: 203)
Name: NF6594_low_114
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39336307 - 39336479
Alignment:
| Q |
18 |
aatattatgcatgagtccaaagtctttcacggaaataattaagttaactgtttaccattaataactcaatgtttttaggtttgcattagcatttaaagta |
117 |
Q |
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| T |
39336307 |
aatattatgcatgagtccaaagtctttcacggaaataattaagttaactgtttaccattaataactcaatgtttttaggtttgcattagcatttagagta |
39336406 |
T |
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| Q |
118 |
agtatgattcttgctatttatgtgttttgattgacggcgagttttcgtagaatcacaatgacaccgtaatttt |
190 |
Q |
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| T |
39336407 |
agtatgattcttgctatttatgtgttttgattgacgacgagttttcgtagaatcacaatgacactgtaatttt |
39336479 |
T |
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