View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_14 (Length: 529)

Name: NF6594_low_14
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_14
NF6594_low_14
[»] chr8 (10 HSPs)
chr8 (281-521)||(26348231-26348471)
chr8 (1-175)||(39469000-39469183)
chr8 (281-431)||(26353203-26353353)
chr8 (176-235)||(26348128-26348187)
chr8 (176-235)||(26353102-26353161)
chr8 (415-514)||(35294560-35294659)
chr8 (311-398)||(35294696-35294784)
chr8 (311-398)||(35289662-35289750)
chr8 (58-102)||(13458523-13458567)
chr8 (72-125)||(13133192-13133245)
[»] chr5 (2 HSPs)
chr5 (281-514)||(24530669-24530921)
chr5 (176-235)||(24530959-24531018)
[»] chr1 (2 HSPs)
chr1 (311-398)||(31679481-31679569)
chr1 (58-102)||(185423-185467)
[»] chr3 (1 HSPs)
chr3 (71-103)||(7844801-7844833)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 281 - 521
Target Start/End: Original strand, 26348231 - 26348471
Alignment:
Q  281 aagttgttgttctgtatattgatgataaactgagagttacaatgtatttatagaggcattctggatgcatataagtgatgacacatgtcatactctaaga 380  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||    
T  26348231 aagttgttattctgtatattaatgataaactgagagttacaatgtatttatagaggcatcctagatgcatataagtgatgacacatgtcatactctgaga 26348330  T
Q  381 ggctaaactatgatacttaatataaagtcttagtctctatatactctaacattcccccctcaaattgaggaggttggtaaccctcagtttgtctctgagt 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26348331 ggctaaactatgatacttaatataaagtcttagtctctatatactctaacattcccccctcaaattgaggaggttggtaaccctcagtttgtctctgagt 26348430  T
Q  481 tccaagaacctggatgtagataaaggcttcgtgatgatgtc 521  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  26348431 tccaagaacttggatgtagataaaggcttcgtgaggatgtc 26348471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 39469000 - 39469183
Alignment:
Q  1 taaaaagagtgtaatggatatactccgtcactgggaaatagttttacacggacattaatgagagaacacaatttt---------tccatgtcataccatc 91  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||         ||||||||||||||||    
T  39469000 taaaaagagtttaatggacatactccgtcactgggaaatagttttacactgacatcaatgagagaacacaatttttccattttttccatgtcataccatc 39469099  T
Q  92 aatttcaaaatgttcatacaaaaatggggtgatgcgaaaattgatggattttcattgtatgttggtgtaaaacagagtgcatat 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39469100 aatttcaaaatgttcatacaaaaatgaggtgatgcgaaaattgatggattttcattgtatgttggtgtaaaacagagtgcatat 39469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 26353203 - 26353353
Alignment:
Q  281 aagttgttgttctgtatattgatgataaactgagagttacaatgtatttatagaggcattctggatgcatataagtgatgacacatgtcatactctaaga 380  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||    
T  26353203 aagttgttattctgtatattaatgataaactgagagttacaatgtatttatagaggcatcctagatgcatataagtgatgacacatgtcatactctgaga 26353302  T
Q  381 ggctaaactatgatacttaatataaagtcttagtctctatatactctaaca 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353303 ggctaaactatgatacttaatataaagtcttagtctctatatactctaaca 26353353  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 26348128 - 26348187
Alignment:
Q  176 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaacagaattcagtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26348128 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaacagaaatcagtt 26348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 26353102 - 26353161
Alignment:
Q  176 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaacagaattcagtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26353102 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaacagaaatcagtt 26353161  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 35294659 - 35294560
Alignment:
Q  415 ctctatatactctaacattcccccctcaaattgaggaggttggtaaccctcagtttgtctctgagttccaagaacctggatgtagataaaggcttcgtga 514  Q
    |||||| ||||||||||||||||||||||| | |||||||  | ||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||    
T  35294659 ctctatgtactctaacattcccccctcaaactaaggaggtctgaaactctcagtttgtctctgagttccaaaaatctggatgtagataatggcttagtga 35294560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 35294784 - 35294696
Alignment:
Q  311 tgagagttacaatgtatttatagaggcattct-ggatgcatataagtgatgacacatgtcatactctaagaggctaaactatgatactt 398  Q
    |||||| ||||||||||||||||| ||||||| ||| |||||| |||| |||||||||||| |||| |||||||||| |||| ||||||    
T  35294784 tgagagatacaatgtatttatagatgcattctaggaagcatatgagtggtgacacatgtcacactccaagaggctaagctataatactt 35294696  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 35289750 - 35289662
Alignment:
Q  311 tgagagttacaatgtatttatagaggcattctg-gatgcatataagtgatgacacatgtcatactctaagaggctaaactatgatactt 398  Q
    |||||| ||||||||||||||||| |||||||  || |||||| |||| |||||||||||| |||| |||| ||||| |||| ||||||    
T  35289750 tgagagatacaatgtatttatagatgcattctaagaagcatatgagtggtgacacatgtcacactccaagaagctaagctataatactt 35289662  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 13458567 - 13458523
Alignment:
Q  58 atgagagaacacaatttttccatgtcataccatcaatttcaaaat 102  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  13458567 atgagagaccaccatttttccatgtcataccaccaatttcaaaat 13458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 13133245 - 13133192
Alignment:
Q  72 tttttccatgtcataccatcaatttcaaaatgttcatacaaaaatggggtgatg 125  Q
    |||||||||||||||||| ||||||||||||   | ||||||| ||||||||||    
T  13133245 tttttccatgtcataccaccaatttcaaaatacccttacaaaagtggggtgatg 13133192  T

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Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 281 - 514
Target Start/End: Complemental strand, 24530921 - 24530669
Alignment:
Q  281 aagttgttgttctgtatattgatgataaactgagagttacaatgtatttatagaggcattctggatgcatataagtgatgacacatgtcatactctaaga 380  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  24530921 aagttgtagttctgtatattaatgataaactgagagttacaatgtatttatagaagcattctagattcatataagtgatgacacatgtcacactctaaga 24530822  T
Q  381 ggctaaactatgatacttaat-------------------ataaagtcttagtctctatatactctaacattcccccctcaaattgaggaggttggtaac 461  Q
    |||||| |||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24530821 ggctaagctatgatacttaagctatcttatactggttaacataaagtcttagtctctatatactctaacattcccccctcaaactgaggaggttggtaac 24530722  T
Q  462 cctcagtttgtctctgagttccaagaacctggatgtagataaaggcttcgtga 514  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  24530721 cctcagtttgtctctgagttccaagaacctggatgtagatagaggcttggtga 24530669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 24531018 - 24530959
Alignment:
Q  176 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaacagaattcagtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24531018 tattagaaattagcaaccgccattgatgaacaatggtgaagcttgtaactgaattcagtt 24530959  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 31679481 - 31679569
Alignment:
Q  311 tgagagttacaatgtatttatagaggcattct-ggatgcatataagtgatgacacatgtcatactctaagaggctaaactatgatactt 398  Q
    |||||| ||||||||||||||||| ||||||| ||| |||||| |||| |||||||||||| |||| |||||||||| |||| ||||||    
T  31679481 tgagagatacaatgtatttatagatgcattctaggaagcatatgagtggtgacacatgtcacactccaagaggctaagctataatactt 31679569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 185467 - 185423
Alignment:
Q  58 atgagagaacacaatttttccatgtcataccatcaatttcaaaat 102  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||||||    
T  185467 atgagagaccaccatttttcaatgtcgtaccatcaatttcaaaat 185423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 7844833 - 7844801
Alignment:
Q  71 atttttccatgtcataccatcaatttcaaaatg 103  Q
    |||||||||||||||||||||||||||||||||    
T  7844833 atttttccatgtcataccatcaatttcaaaatg 7844801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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