View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_16 (Length: 512)

Name: NF6594_low_16
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_16
NF6594_low_16
[»] chr3 (13 HSPs)
chr3 (17-497)||(36081750-36082230)
chr3 (23-96)||(55121202-55121275)
chr3 (26-93)||(18093820-18093887)
chr3 (26-93)||(31836453-31836520)
chr3 (25-78)||(10937938-10937991)
chr3 (27-96)||(43159188-43159255)
chr3 (25-94)||(29212884-29212953)
chr3 (30-91)||(32833526-32833587)
chr3 (10-46)||(8380465-8380501)
chr3 (17-93)||(28732492-28732568)
chr3 (17-93)||(32711239-32711315)
chr3 (65-97)||(48593227-48593259)
chr3 (57-93)||(52864986-52865022)
[»] chr2 (11 HSPs)
chr2 (23-86)||(12801088-12801151)
chr2 (12-97)||(25997344-25997429)
chr2 (30-93)||(25931618-25931681)
chr2 (30-96)||(32516180-32516246)
chr2 (8-96)||(472436-472524)
chr2 (63-96)||(7833314-7833347)
chr2 (47-92)||(11565033-11565078)
chr2 (57-93)||(7943516-7943552)
chr2 (63-95)||(9113999-9114031)
chr2 (57-97)||(20555289-20555329)
chr2 (29-93)||(29168545-29168609)
[»] chr5 (12 HSPs)
chr5 (25-94)||(32522569-32522638)
chr5 (26-93)||(22398076-22398143)
chr5 (17-87)||(10244030-10244100)
chr5 (33-91)||(18551010-18551068)
chr5 (17-93)||(43221592-43221668)
chr5 (30-93)||(19522549-19522612)
chr5 (26-93)||(20269473-20269540)
chr5 (10-97)||(11089316-11089407)
chr5 (23-60)||(12399320-12399357)
chr5 (23-95)||(1138261-1138332)
chr5 (17-97)||(11417420-11417500)
chr5 (17-61)||(25840606-25840650)
[»] chr1 (10 HSPs)
chr1 (26-83)||(11900869-11900926)
chr1 (25-93)||(8900825-8900893)
chr1 (17-97)||(47084597-47084677)
chr1 (26-93)||(35489228-35489295)
chr1 (54-97)||(50105687-50105730)
chr1 (31-93)||(882957-883019)
chr1 (27-97)||(1226704-1226773)
chr1 (57-93)||(519910-519946)
chr1 (57-93)||(26070859-26070895)
chr1 (57-93)||(49944868-49944904)
[»] chr7 (4 HSPs)
chr7 (26-82)||(30005620-30005676)
chr7 (17-86)||(40332305-40332374)
chr7 (17-83)||(2399741-2399807)
chr7 (65-97)||(41850627-41850659)
[»] chr8 (9 HSPs)
chr8 (17-96)||(30542494-30542573)
chr8 (26-94)||(24185562-24185630)
chr8 (26-78)||(44329199-44329251)
chr8 (26-97)||(20694461-20694532)
chr8 (26-83)||(8168948-8169005)
chr8 (17-94)||(42662715-42662792)
chr8 (55-95)||(5311397-5311437)
chr8 (65-97)||(6354732-6354764)
chr8 (26-94)||(40737865-40737932)
[»] chr6 (7 HSPs)
chr6 (17-62)||(24252919-24252964)
chr6 (47-95)||(862885-862933)
chr6 (29-96)||(674095-674162)
chr6 (30-97)||(8051005-8051072)
chr6 (30-88)||(11378796-11378854)
chr6 (25-83)||(16260664-16260722)
chr6 (17-82)||(31159110-31159175)
[»] chr4 (5 HSPs)
chr4 (17-82)||(44626430-44626495)
chr4 (29-82)||(23673401-23673454)
chr4 (17-97)||(30920742-30920822)
chr4 (26-90)||(38562160-38562224)
chr4 (57-93)||(41116597-41116633)
[»] scaffold0777 (1 HSPs)
scaffold0777 (17-93)||(4743-4819)
[»] scaffold0110 (1 HSPs)
scaffold0110 (65-97)||(1617-1649)
[»] scaffold0025 (1 HSPs)
scaffold0025 (63-95)||(65983-66015)


Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 36081750 - 36082230
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaattannnnnnnnngcgtataaat 116  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||           | |||||||    
T  36081750 tttaagtttattgaataattaatatatttgatcatatttatagataagatacatgaattattcaatgaacctaaaaaattgtttttttttacttataaat 36081849  T
Q  117 gtaattggagagagtactgcagtgcaagaaattattgaccaaaaatgtttaaatctagatgaagtgggtgaaggaaagaaaacagcggagacaaccggaa 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36081850 gtaattggagagagtattgcagtgcaagaaattattgaccaaaaatgtttaaatctagatgaagtgggtgaaggaaagaaaacagcggagacaaccggaa 36081949  T
Q  217 tgaaaaggaggatgaaagaagagaggtacccagggagtggagaaggaagttagtggagtggcagaaactcaagaaaagataaacaagttttaatcttgag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36081950 tgaaaaggaggatgaaagaagagaggtacccagggagtggagaaggaagttagtggagtggcagaaactcaagaaaagataaacaagttttaatcttgag 36082049  T
Q  317 gtagtgctaccgaattgtccaatgttatcggagttaccagcgttgggtttgagactttcagcggataatgtagggatgtcaaagccgaggcagtaagtgt 416  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36082050 gtagtgctaccggattgtccaatattatcggagttaccagcgttgggtttgagactttcagcggataatgtagggatgtcaaagccgaggcagtaagtgt 36082149  T
Q  417 agttggtgtcgatggaaatgatttagatgcacaaagaattttcacgttgcaaaggtgaaaattatgatttagatgcttctt 497  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36082150 agttggtgtcgatagaaatgatttagatgcacaaagaattttcacgttgcaaaggtgaaaattatgatttagatgcttctt 36082230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 55121275 - 55121202
Alignment:
Q  23 tttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    |||||| |||||||||| |||||||||||||||||| |  | |||||| | |||||||||||| ||||||||||    
T  55121275 tttattaaataattaatgtatttggtcacatttataaaccaaatacattagttattcaatgaacctaaaaaatt 55121202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 18093820 - 18093887
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||| | ||||||||||||| | |||||||| ||||||||||| || |||||||    
T  18093820 attgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaacctaaaaa 18093887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 31836453 - 31836520
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| |||| |||||||||  | |||||| |||||||||||||| |||||||    
T  31836453 attgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatgaacctaaaaa 31836520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 10937938 - 10937991
Alignment:
Q  25 tattgaataattaatatatttggtcacatttatagataagatacatgaattatt 78  Q
    |||||||||||||||||||  |||||||||||||||| ||||| || |||||||    
T  10937938 tattgaataattaatatatcgggtcacatttatagattagatatattaattatt 10937991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 43159255 - 43159188
Alignment:
Q  27 ttgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    |||||||| |||| |||||||||||||||||||| || ||| || ||||||| |||||||||||||||||    
T  43159255 ttgaataactaatgtatttggtcacatttatagacaa-atatat-aattatttaatgaatctaaaaaatt 43159188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 29212884 - 29212953
Alignment:
Q  25 tattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaa 94  Q
    ||||||||||| ||| |||   ||||||||||||| | |||||||| |||||||||||| | ||||||||    
T  29212884 tattgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatgtacctaaaaaa 29212953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 32833587 - 32833526
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaa 91  Q
    |||||||||| ||||||||||||||||||||  | |||||| | ||||||||| ||| ||||    
T  32833587 aataattaatgtatttggtcacatttatagaccaaatacattagttattcaataaatttaaa 32833526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 8380465 - 8380501
Alignment:
Q  10 ataattctttaagtttattgaataattaatatatttg 46  Q
    |||||| |||| |||||||||||||||||||||||||    
T  8380465 ataattttttaggtttattgaataattaatatatttg 8380501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 28732492 - 28732568
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||||||   ||| ||| | | ||||||||||||||||||    
T  28732492 tttaggttcattgaataactaatgtatttagtcacatttatagaccggattcattagtcattcaatgaatctaaaaa 28732568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 32711239 - 32711315
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| ||| ||||||||||| || ||||||| |    |||||||  |||||||| ||||||||||||||||||||||    
T  32711239 tttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaa 32711315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 48593227 - 48593259
Alignment:
Q  65 atacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||| ||||||||||||||||||||||||||    
T  48593227 atacataaattattcaatgaatctaaaaaatta 48593259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 52865022 - 52864986
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  52865022 tagataagatacatcaattactcaatgaatctaaaaa 52864986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 12801151 - 12801088
Alignment:
Q  23 tttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaat 86  Q
    ||||| ||||||||||||||||| ||||||||||||||| | |||||| |||||||||||||||    
T  12801151 tttatggaataattaatatatttagtcacatttatagattaaatacattaattattcaatgaat 12801088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 25997429 - 25997344
Alignment:
Q  12 aattctttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||| |||| ||||||||||| |||||||||| || |||||| |||| || |||||||| | ||||||||||||  ||||||||||    
T  25997429 aattttttaggtttattgaatgattaatatatatgatcacatctataaatcagatacattagttattcaatgaacataaaaaatta 25997344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 25931618 - 25931681
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||| ||||||||||||||||||||| | ||||||   |||||||||||| |||||||    
T  25931618 aataattaatgtatttggtcacatttatagatcaaatacattggttattcaatgaacctaaaaa 25931681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 32516180 - 32516246
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    |||||||||  ||||| ||||||||||||||  | |||||| ||||||||||||||| |||||||||    
T  32516180 aataattaacgtattttgtcacatttatagaccaaatacattaattattcaatgaatttaaaaaatt 32516246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 472436 - 472524
Alignment:
Q  8 atataattctttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    |||||| | |||| ||||||||||||| |||| |||||||||| |||||||||  | ||| || | ||||||||| || ||||||||||    
T  472436 atataactttttaggtttattgaataactaatgtatttggtcatatttatagaccaaatatattagttattcaattaacctaaaaaatt 472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 7833347 - 7833314
Alignment:
Q  63 agatacatgaattattcaatgaatctaaaaaatt 96  Q
    |||||||| |||||||||||||||||||||||||    
T  7833347 agatacatcaattattcaatgaatctaaaaaatt 7833314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 11565078 - 11565033
Alignment:
Q  47 gtcacatttatagataagatacatgaattattcaatgaatctaaaa 92  Q
    ||||||||||||||| || ||||| |||||||||||| ||||||||    
T  11565078 gtcacatttatagatcaggtacattaattattcaatgtatctaaaa 11565033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 7943516 - 7943552
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  7943516 tagacaagatacatcaattattcaatgaatctaaaaa 7943552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 9113999 - 9114031
Alignment:
Q  63 agatacatgaattattcaatgaatctaaaaaat 95  Q
    |||||||| ||||||||||||||||||||||||    
T  9113999 agatacattaattattcaatgaatctaaaaaat 9114031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 20555329 - 20555289
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||| ||||||||| |||||||||||| |||||||||||||    
T  20555329 tagacaagatacatcaattattcaatgtatctaaaaaatta 20555289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 29168545 - 29168609
Alignment:
Q  29 gaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||| ||||| || ||||||||||||||  |||||||||| ||||||| |||| || ||||||    
T  29168545 gaataactaatacatctggtcacatttataagtaagatacattaattatttaatgtatttaaaaa 29168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 32522569 - 32522638
Alignment:
Q  25 tattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaa 94  Q
    ||||||||||||||| |||   ||||||||||||||| |||||||| |||||||||||| || |||||||    
T  32522569 tattgaataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgtatttaaaaaa 32522638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 22398143 - 22398076
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| |||||||||| |||||||||  | |||||  ||||||||||| ||||||||||    
T  22398143 attgaataattaatgtatttggtcatatttatagactatatacaataattattcaataaatctaaaaa 22398076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 10244100 - 10244030
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatc 87  Q
    |||||| |||||||||||||||| ||| |  |||||||||||| | |||||||| |||||| |||||||||    
T  10244100 tttaagcttattgaataattaatgtatctattcacatttataggtcagatacattaattatccaatgaatc 10244030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 18551068 - 18551010
Alignment:
Q  33 aattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaa 91  Q
    ||||||| ||||||||||||||| ||||| | |||||| | ||||||||||||||||||    
T  18551068 aattaatgtatttggtcacatttgtagatcaaatacattagttattcaatgaatctaaa 18551010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 43221668 - 43221592
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| |||||||||| ||||||| ||| |||||||||||| |||   |||||||  |||||| ||||||||||||||    
T  43221668 tttaggtttattgaaaaattaatgtatgtggtcacatttacagacccgatacattgattatttaatgaatctaaaaa 43221592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 19522612 - 19522549
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    ||||||||||||||||| |||||||||| | | |||||||| ||||||| |||| || ||||||    
T  19522612 aataattaatatatttgatcacatttatgggttagatacattaattattgaatgtatttaaaaa 19522549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 20269540 - 20269473
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| |||| |||| ||| | |||||||| |||||||||||  |||||||||    
T  20269540 attgaataattaatgtatttcgtcatatttgtaggtcagatacatcaattattcaatatatctaaaaa 20269473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 11089407 - 11089316
Alignment:
Q  10 ataattctttaagtttattgaataattaatatatttggtcacatttatagataagataca----tgaattattcaatgaatctaaaaaatta 97  Q
    |||||| |||||||| || ||||||||||||| |  |||||||||||||  | |||||||    | |||||||||||| |||||||||||||    
T  11089407 ataattttttaagttcatcgaataattaatatttccggtcacatttatatgttagatacattagttaattattcaatgtatctaaaaaatta 11089316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 12399357 - 12399320
Alignment:
Q  23 tttattgaataattaatatatttggtcacatttataga 60  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  12399357 tttattgaataattaatatatctagtcacatttataga 12399320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 1138261 - 1138332
Alignment:
Q  23 tttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaat 95  Q
    ||||||||||||||||| |||||||||  |||| |||   |||||||| ||||||| ||||||| ||||||||    
T  1138261 tttattgaataattaatgtatttggtc-tatttctagtctagatacattaattatttaatgaatttaaaaaat 1138332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 11417420 - 11417500
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||||| |||||||||||| |  || |||||| |||||||||  | |||||| | | |||||||||| |||||||||||    
T  11417420 tttaagttcattgaataattattgaatctggtcatatttatagaccatatacattagtcattcaatgaacctaaaaaatta 11417500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 25840606 - 25840650
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagat 61  Q
    ||||| || ||||||||| |||| |||||||||||||||||||||    
T  25840606 tttaaattcattgaataagtaatgtatttggtcacatttatagat 25840650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 11900926 - 11900869
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatg 83  Q
    |||||||||||||||||| ||||||||||||||| | | |||||| ||||||||||||    
T  11900926 attgaataattaatatatctggtcacatttataggtcaaatacattaattattcaatg 11900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 8900893 - 8900825
Alignment:
Q  25 tattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    ||||||||||||||| |||  |||||||||||||| | |||||||| |||||||||||| | |||||||    
T  8900893 tattgaataattaatgtatccggtcacatttataggttagatacattaattattcaatgtacctaaaaa 8900825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 47084597 - 47084677
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    ||||| |||||  |||||||||| |||||||||| |||||||||| | |||||| | |||||| ||||| |||||||||||    
T  47084597 tttaaatttatcaaataattaatgtatttggtcatatttatagatcaaatacattagttattctatgaacctaaaaaatta 47084677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 35489295 - 35489228
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    ||||||||||||||  || |||| | |||||||| | |||||||| |||||||||||| |||||||||    
T  35489295 attgaataattaatgaatctggtgatatttataggttagatacattaattattcaatgtatctaaaaa 35489228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 50105730 - 50105687
Alignment:
Q  54 ttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  50105730 ttatagatcagatacattgattattcaatgaatctaaaaaatta 50105687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 883019 - 882957
Alignment:
Q  31 ataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    ||||||||| |||||| ||||||||||| || | |||||| | |||||||||||| |||||||    
T  883019 ataattaatgtatttgatcacatttatatattaaatacattagttattcaatgaacctaaaaa 882957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 1226704 - 1226773
Alignment:
Q  27 ttgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||||| |||| |||||||||| ||||||||| || |||||| | ||||||||||||  ||||||||||    
T  1226704 ttgaataaataatgtatttggtcatatttatagacaa-atacattagttattcaatgaacttaaaaaatta 1226773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 519910 - 519946
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  519910 tagataagatacatcaattactcaatgaatctaaaaa 519946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 26070895 - 26070859
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  26070895 tagataagatacatcaattactcaatgaatctaaaaa 26070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 49944904 - 49944868
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  49944904 tagacaagatacatcaattattcaatgaatctaaaaa 49944868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30005676 - 30005620
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaat 82  Q
    ||||||||||||||||||||||||||||||||   | |||||||| |||||||||||    
T  30005676 attgaataattaatatatttggtcacatttatgagttagatacattaattattcaat 30005620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 40332374 - 40332305
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaat 86  Q
    ||||| |||||| ||||||||||||||||||||    ||||| || | ||||||||||||||||||||||    
T  40332374 tttaaatttattaaataattaatatatttggtctatattataaatcatatacatgaattattcaatgaat 40332305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 2399807 - 2399741
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatg 83  Q
    ||||||| ||||||||||||||| |||  |||||||||||||  | |||||||| || |||||||||    
T  2399807 tttaagtatattgaataattaatgtatccggtcacatttataagttagatacattaactattcaatg 2399741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 41850659 - 41850627
Alignment:
Q  65 atacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||| ||||||||||||||||||||||||||    
T  41850659 atacattaattattcaatgaatctaaaaaatta 41850627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 30542494 - 30542573
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    ||||||| |||||||||||||||||||||||| ||||||| || | | ||| || |||||||||||| |  |||||||||    
T  30542494 tttaagtatattgaataattaatatatttggttacatttaaaggttaaatatattaattattcaatgtacttaaaaaatt 30542573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 24185630 - 24185562
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaa 94  Q
    |||||||||||||| |||   ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  24185630 attgaataattaatgtatccagtcacatttataggttagatatattaattattcaatgtatctaaaaaa 24185562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 44329199 - 44329251
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattatt 78  Q
    |||||||||||||| ||||||||||||||||| | | |||||||| |||||||    
T  44329199 attgaataattaatgtatttggtcacatttatgggttagatacattaattatt 44329251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 20694461 - 20694532
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||||||||||| |||   ||||||||||||| | ||||||||  | ||||||||| |||||||||||||    
T  20694461 attgaataattaatttatcaagtcacatttataggttagatacattgactattcaatgtatctaaaaaatta 20694532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 8169005 - 8168948
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatg 83  Q
    ||||||| ||||||||||    |||||||||||||| |||||||| ||||||||||||    
T  8169005 attgaatgattaatatatgcaatcacatttatagatcagatacattaattattcaatg 8168948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 42662715 - 42662792
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaa 94  Q
    ||||| ||||||||||||||||| ||| || ||| |||||||||   |||||||  |||||| |||||| ||||||||    
T  42662715 tttaaatttattgaataattaatgtatctgatcaaatttatagacctgatacattgattatttaatgaacctaaaaaa 42662792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 5311397 - 5311437
Alignment:
Q  55 tatagataagatacatgaattattcaatgaatctaaaaaat 95  Q
    ||||||| | |||||| ||||||||||||||||||||||||    
T  5311397 tatagattaaatacattaattattcaatgaatctaaaaaat 5311437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 6354732 - 6354764
Alignment:
Q  65 atacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||| ||||||||||||||||||||||||||    
T  6354732 atacataaattattcaatgaatctaaaaaatta 6354764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 40737865 - 40737932
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaa 94  Q
    |||||||||||||| |||  ||||||||||| || | |||||||| |||||||||||| | ||||||||    
T  40737865 attgaataattaatgtatccggtcacattta-aggtcagatacattaattattcaatgtacctaaaaaa 40737932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24252919 - 24252964
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagata 62  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||    
T  24252919 tttaagtatattgaataattaatgtattcggtcacatttatagata 24252964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 862885 - 862933
Alignment:
Q  47 gtcacatttatagataagatacatgaattattcaatgaatctaaaaaat 95  Q
    ||||||||||||| | |||||||| |||||||||||| |||||||||||    
T  862885 gtcacatttataggttagatacattaattattcaatgtatctaaaaaat 862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 674095 - 674162
Alignment:
Q  29 gaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatt 96  Q
    ||||||||||| |||||| ||| |||||||||  | ||| || | |||||||||||||||||||||||    
T  674095 gaataattaatgtatttgctcatatttatagaccaaatatattagttattcaatgaatctaaaaaatt 674162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 8051072 - 8051005
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||||||| |||||  |||||||||||||| | |||||| |||||||||||  || ||||||||||    
T  8051072 aataattaatgtatttaatcacatttatagattatatacattaattattcaatatatttaaaaaatta 8051005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 11378854 - 11378796
Alignment:
Q  30 aataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatct 88  Q
    |||||||||| || |  |||||||||||| || ||||||||||||||||||||| ||||    
T  11378854 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtatct 11378796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 16260722 - 16260664
Alignment:
Q  25 tattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatg 83  Q
    ||||||||||||||| ||||  ||||||||||||| | ||| |||| ||||||||||||    
T  16260722 tattgaataattaatgtattcagtcacatttataggttagagacattaattattcaatg 16260664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 31159110 - 31159175
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaat 82  Q
    |||| ||| |||||||||||||| |||| |||||||||||||  | |||||||| | |||||||||    
T  31159110 tttatgttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaat 31159175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 44626430 - 44626495
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaat 82  Q
    ||||||| ||||||||||||||| ||| |||||||||| |||| | ||||||||  ||||||||||    
T  44626430 tttaagtatattgaataattaatttatgtggtcacattcataggttagatacattgattattcaat 44626495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 23673401 - 23673454
Alignment:
Q  29 gaataattaatatatttggtcacatttatagataagatacatgaattattcaat 82  Q
    ||||||||||| ||||||||||||| ||||  | |||||||| |||||||||||    
T  23673401 gaataattaatgtatttggtcacatatatatgtcagatacattaattattcaat 23673454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 30920742 - 30920822
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaaatta 97  Q
    ||||||||||||||||||||||| |||  | ||| | |||||||||| ||| || | ||||||||| ||  ||||||||||    
T  30920742 tttaagtttattgaataattaatgtatccgatcataattatagataaaatatattagttattcaataaacttaaaaaatta 30920822  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 38562224 - 38562160
Alignment:
Q  26 attgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaa 90  Q
    |||||||||||||| |||  ||||||||||||||   | |||||| |||||||||||| ||||||    
T  38562224 attgaataattaatgtatccggtcacatttataggacatatacattaattattcaatgtatctaa 38562160  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 41116633 - 41116597
Alignment:
Q  57 tagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  41116633 tagataagatacatcaattactcaatgaatctaaaaa 41116597  T

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Target: scaffold0777 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 4819 - 4743
Alignment:
Q  17 tttaagtttattgaataattaatatatttggtcacatttatagataagatacatgaattattcaatgaatctaaaaa 93  Q
    |||| |||||| ||||||||||| ||| | |||||||||||| || | |||||| | ||||||||||||| ||||||    
T  4819 tttaggtttatggaataattaatgtatctagtcacatttatatatcaaatacattagttattcaatgaatttaaaaa 4743  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 1617 - 1649
Alignment:
Q  65 atacatgaattattcaatgaatctaaaaaatta 97  Q
    |||||| ||||||||||||||||||||||||||    
T  1617 atacatcaattattcaatgaatctaaaaaatta 1649  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 66015 - 65983
Alignment:
Q  63 agatacatgaattattcaatgaatctaaaaaat 95  Q
    ||||||||||||| |||||||||||||||||||    
T  66015 agatacatgaatttttcaatgaatctaaaaaat 65983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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