View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_18 (Length: 502)
Name: NF6594_low_18
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 16050557 - 16050253
Alignment:
| Q |
19 |
caatcatgattttaaacaaaggtcctcgactgcgatctgggtcgtgacataacaaatttgatgttgttgaaaccacgatgcagctgtaagtgaggccacg |
118 |
Q |
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| T |
16050557 |
caatcatgattttaaacaaaggtcctcgactgcgatctgggtcgtgacataacaaatttaatgttgttgaaaccacgatgcggctgcaagtgaggccacg |
16050458 |
T |
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| Q |
119 |
tttaatcttgattctctccaattttaaggattgtgacacaacccagatagcatatcaaatcaactataaggatcataaccaaatttgcttcaccttacta |
218 |
Q |
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| T |
16050457 |
tttaatcttgattctctccaattttaaggattgtgacacaacccagatagcataacaaatcaactataaggatcataaccaaacttgcttcaccttacta |
16050358 |
T |
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| Q |
219 |
aataacaatgaaccgacattttgttaaaactaaaagcgtagtttttgtcaaaatcacgacataacacaatagttccgacaatccaaccatatagtatgtc |
318 |
Q |
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| T |
16050357 |
aataacaatgaaccgacattttgttaaaactaaaagcgtagtttttgtcaaaatcacgacataacacaatagttccgacaatccaaccatatagtatgtc |
16050258 |
T |
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| Q |
319 |
tctac |
323 |
Q |
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||||| |
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| T |
16050257 |
tctac |
16050253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 16050179 - 16050108
Alignment:
| Q |
397 |
ggtggagaaggtgagagtaaatgataaggaggtcaaagattcaatggcaactcataatataataataccttt |
468 |
Q |
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| T |
16050179 |
ggtggagaaggtgagagtaaatgataaggaggtcaaagattcaatggcaactcataatataataataccttt |
16050108 |
T |
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