View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_19 (Length: 497)
Name: NF6594_low_19
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 154 - 481
Target Start/End: Original strand, 7837257 - 7837584
Alignment:
| Q |
154 |
aaatatgttaccgagaatgtctgagaaaccacgcggcaagcatgggaagccacgtggtagatggatgtggtgaattcatgccaagcggtgaagaaggtac |
253 |
Q |
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| T |
7837257 |
aaatatgttaccgagaatgtctgagaaaccacgcggcaagcatgggaagccacgtggtagatggatgtggtgaattcatgccaagcggtgaagaaggtac |
7837356 |
T |
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| Q |
254 |
cccacaatacttcaaatgtgctgcttgtgattgtcaccgtaatttccatcgaaaacatgtccaacaacaacatagtattcctcaacaacattttcagcat |
353 |
Q |
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| T |
7837357 |
cccacaatacttcaaatgtgctgcttgtgattgtcaccgtaatttccatcgaaaacatgtccaacaacaacatagtattcctcaacaacatgttcagcat |
7837456 |
T |
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| Q |
354 |
gttcctaattatcatcatagcaacaacaacggtcaccttaatcttccaacaccatcttcttcatctcaaagaatttcacaacctagttctggacaagttc |
453 |
Q |
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| T |
7837457 |
gttcctaattatcatcatagcaacaacaacggtcaccttaatcttccaacaccatcttcttcatctcaaagagtttcacaacctagttctggacaagttc |
7837556 |
T |
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| Q |
454 |
caccgtccatgatgatgacttttggatc |
481 |
Q |
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| T |
7837557 |
caccgtccatgatgatgacttttggatc |
7837584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7837104 - 7837187
Alignment:
| Q |
1 |
ataatactactactaatctttatccaccaccacatcttgcaccttcttctcaaagacctatcatagatccagatctaacggctg |
84 |
Q |
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| T |
7837104 |
ataatactactactaatctttatccaccaccacatcttgcaccttcttctcaaagacctatcatagatccagatctaacggctg |
7837187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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