View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_2 (Length: 772)
Name: NF6594_low_2
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 306 - 757
Target Start/End: Complemental strand, 44636493 - 44636061
Alignment:
| Q |
306 |
tagcatgctactagaaaaacaaatattacgactcnnnnnnnatcttcatcttcatcttaaccctagttatttatttatcactaagatagtcattttgaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636493 |
tagcatgctactagaaaaacaaatattacgactctttttttatcttcatcttcatcttaaccctagttatttatttatcactaagatagtcattttgaaa |
44636394 |
T |
|
| Q |
406 |
ttactagttttcatgattgttgagttgtgttgtctaacttgttttctattgacagtgctgctcatgttgcagttacaacacttcatgtgtgctgtgagac |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636393 |
ttactagttttcatgattgttgagttgtgttgtctaacttgttttctattgacagtgctgctcatgttgcagttacaacacttcatgtgtgctgtgagac |
44636294 |
T |
|
| Q |
506 |
acatcatttcatgaaattctcatgtgtatgccatcatatgtatctatgtagttacataagtattattatttgatgttaactattttgcatgagatccatc |
605 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636293 |
acat-------------------gtgtatgccatcatatgtatctatgtagttacataagtattattatttgatgttaactattttgcatgagatccatc |
44636213 |
T |
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| Q |
606 |
acgttatagttatactttgctatgcacatgaaatgatactccatcttattaccgtatatatggattggagcaaacaaataatcagattactgctgcaaat |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44636212 |
acgttatagttatactttgctatgcacatgaaatgatactccatcttattaccgtatatatggattggagcaaacaaataatcagattactgctacaaat |
44636113 |
T |
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| Q |
706 |
agacggggttttccccatatttttatgcaaaacttgcaactttttgtctgtg |
757 |
Q |
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| T |
44636112 |
agacggggttttccccatatttttatgcaaaacttgcaactttttgtctgtg |
44636061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 44636784 - 44636649
Alignment:
| Q |
18 |
agtactaagttgcatcctatacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggagacgagtccttaacaaaattcttgaa |
117 |
Q |
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| T |
44636784 |
agtactaagttgcatcctatacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggagacgagtccttaacaaaattcttgaa |
44636685 |
T |
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| Q |
118 |
accaaccacatacattatgatgacgacagcgacagt |
153 |
Q |
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| T |
44636684 |
accaaccacatacattatgatgacgacagcgacagt |
44636649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 44636601 - 44636557
Alignment:
| Q |
198 |
agaacaacaagaatacgtttgaactgggaatgattaaacaaattc |
242 |
Q |
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| T |
44636601 |
agaacaacaagaatacgtttgaactgggaatgattaaacaaattc |
44636557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 393 - 477
Target Start/End: Original strand, 4142191 - 4142276
Alignment:
| Q |
393 |
agtcattttgaaattactagttttcatgattgttgagttgtgttgtctaacttgttttctat-tgacagtgctgctcatgttgcag |
477 |
Q |
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||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||| |
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| T |
4142191 |
agtcattttgacattaccagttttcatgattgttaggttgtgttgtttaacttgttttctatatgacagtgctgctcgtgttgcag |
4142276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 1882356 - 1882440
Alignment:
| Q |
353 |
atcttcatcttaaccctagttatttatttatcactaa-gatagtcattttgaaattactagttttcatgattgttgagttgtgttg |
437 |
Q |
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| T |
1882356 |
atcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaattac-atttttcatgattgttgagttgtgttg |
1882440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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