View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_low_20 (Length: 463)
Name: NF6594_low_20
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_20 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 28328254 - 28328684
Alignment:
| Q |
14 |
atatcaaactgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328254 |
atatcaaactgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagttt |
28328353 |
T |
|
| Q |
114 |
cacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328354 |
cacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaat |
28328453 |
T |
|
| Q |
214 |
ttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328454 |
ttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgactt |
28328553 |
T |
|
| Q |
314 |
aatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggat |
413 |
Q |
| |
|
||||||||||||||||||||||||||| | || | ||||| |||||||||||||| |||| |||||| || || |||||||| | |||||||||| || |
|
|
| T |
28328554 |
aatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaat |
28328653 |
T |
|
| Q |
414 |
tccagagtggtttgatcgccaaaacatggga |
444 |
Q |
| |
|
||||||||||||||| | |||||| |||||| |
|
|
| T |
28328654 |
tccagagtggtttgagcaccaaaatatggga |
28328684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 28505890 - 28506320
Alignment:
| Q |
14 |
atatcaaactgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505890 |
atatcaaactgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagttt |
28505989 |
T |
|
| Q |
114 |
cacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505990 |
cacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaat |
28506089 |
T |
|
| Q |
214 |
ttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506090 |
ttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgactt |
28506189 |
T |
|
| Q |
314 |
aatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggat |
413 |
Q |
| |
|
||||||||||||||||||||||||||| | || | ||||| |||||||||||||| |||| |||||| || || |||||||| | |||||||||| || |
|
|
| T |
28506190 |
aatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaat |
28506289 |
T |
|
| Q |
414 |
tccagagtggtttgatcgccaaaacatggga |
444 |
Q |
| |
|
||||||||||||||| | |||||| |||||| |
|
|
| T |
28506290 |
tccagagtggtttgagcaccaaaatatggga |
28506320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 28524890 - 28525321
Alignment:
| Q |
14 |
atatcaaactgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagttt |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
28524890 |
atatcaaactgaaaaaatgcaacttgtcagatgattttcttccaatacttgtcatgtggtctgctaatgtgaaaatattagacctatcaggaaataattt |
28524989 |
T |
|
| Q |
114 |
cacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| | |||| |||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
28524990 |
cacaattcttccagaatgcatcaaagattttcagtttttatatgctcttatattggatgattgcaagtgccttagagaaattagagggatgccgccaaat |
28525089 |
T |
|
| Q |
214 |
ttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgactt |
313 |
Q |
| |
|
||| ||| |||||||||| | |||||||||| |||||||||||| || |||||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
28525090 |
ttagcatacttgtctgcaataggctgcaaatccttgacttcctcggccagaaacatgctattgaatcaggtttttttttttcc--ccttgtatttgactt |
28525187 |
T |
|
| Q |
314 |
aatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
28525188 |
aatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggat |
28525287 |
T |
|
| Q |
414 |
tccagagtggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
28525288 |
tccagagtggtttgatcaccaaaacatgggacat |
28525321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 28 - 447
Target Start/End: Original strand, 28246026 - 28246451
Alignment:
| Q |
28 |
aaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||| ||||||||| ||| | ||||||||||||||||| |
|
|
| T |
28246026 |
aaatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccag |
28246125 |
T |
|
| Q |
128 |
aatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtc |
227 |
Q |
| |
|
||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
28246126 |
aatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtc |
28246225 |
T |
|
| Q |
228 |
tgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtt-ttta-----ttccttgtatttgacttaatatttt |
321 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
28246226 |
tgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgtttattgttttccttgtatttgacttaatattat |
28246325 |
T |
|
| Q |
322 |
ataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagt |
421 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||| | |||||||||||||||||||| | |
|
|
| T |
28246326 |
ataatattgtttactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagatt |
28246425 |
T |
|
| Q |
422 |
ggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
28246426 |
ggtttgatcaccaaagcatgggacat |
28246451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 447
Target Start/End: Original strand, 28239048 - 28239473
Alignment:
| Q |
31 |
tgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccagaat |
130 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28239048 |
tgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaat |
28239147 |
T |
|
| Q |
131 |
gcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgc |
230 |
Q |
| |
|
|||||||||||||||||||||| || | |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
28239148 |
gcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgc |
28239247 |
T |
|
| Q |
231 |
aaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtt---------ttgtgtttttattccttgtatttgacttaatatttt |
321 |
Q |
| |
|
||||| |||||||||||||| ||||||| || |||||||||||||||||||||| || | ||| | ||||||||||||| ||||||||||| |
|
|
| T |
28239248 |
aaaatactgcaaatcattgatttcctcggccagaaacatgctattgaatcaggttttttttttattttttttgttttccttgtatttgtcttaatatttt |
28239347 |
T |
|
| Q |
322 |
ataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagt |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||| | ||||||| ||||||||||||| |
|
|
| T |
28239348 |
ataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagt |
28239447 |
T |
|
| Q |
422 |
ggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
28239448 |
ggtttgatcatcaaaacatgggacat |
28239473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 31 - 447
Target Start/End: Original strand, 28191074 - 28191496
Alignment:
| Q |
31 |
tgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccagaat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28191074 |
tgcaacttgtcagatgaatttcttccaatatttgtcatgtggtctgcttacgtgagaatcttagacctatcaggaaataatttcacaattcttccagaat |
28191173 |
T |
|
| Q |
131 |
gcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgc |
230 |
Q |
| |
|
||||||||||||||| | |||| ||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| | | |||||||| |
|
|
| T |
28191174 |
gcatcaaagattgtcaccttttatcggatcttatattggatgattgcaagtgccttagagaaattagagggattccactaaatttaacaaacttgtctgc |
28191273 |
T |
|
| Q |
231 |
aaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgt-------gtttttattccttgtatttgacttaatattttat |
323 |
Q |
| |
|
| | |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
28191274 |
agcaaactgcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgttttattcttttgttttccttgtatttcacttaatatt---- |
28191369 |
T |
|
| Q |
324 |
aagattgtttactc----tatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccaga |
419 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||||||||||| || ||||||| ||||| || | |||| |||||| |||||||||||||||||||| |
|
|
| T |
28191370 |
-atattgtttactctatatatgatttattaatggctaacaggatcttcatgaggctggaggaaaagaattttatttgccaggatttgcaaggattccaga |
28191468 |
T |
|
| Q |
420 |
gtggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||||| || ||||||||||||| |
|
|
| T |
28191469 |
gtggtttgatcaccgaaacatgggacat |
28191496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 2170950 - 2170831
Alignment:
| Q |
170 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
269 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| |||||||| ||||||||| | |||||| |||||||||||||| || | || ||| |
|
|
| T |
2170950 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat |
2170851 |
T |
|
| Q |
270 |
gctattgaatcaggttttgt |
289 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
2170850 |
gctacttactcaggttttgt |
2170831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 26638197 - 26638240
Alignment:
| Q |
189 |
agaaattagagggattccaccaaatttaaaatatttgtctgcaa |
232 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26638197 |
agaaattagagggattccaccaaatctaaattacttgtctgcaa |
26638240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 26744163 - 26744206
Alignment:
| Q |
189 |
agaaattagagggattccaccaaatttaaaatatttgtctgcaa |
232 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26744163 |
agaaattagagggattccaccaaatctaaattacttgtctgcaa |
26744206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 26625928 - 26625970
Alignment:
| Q |
190 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaa |
232 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26625928 |
gaaattagagggattccaccaaatctaaattacttgtctgcaa |
26625970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 26731905 - 26731947
Alignment:
| Q |
190 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaa |
232 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26731905 |
gaaattagagggattccaccaaatctaaattacttgtctgcaa |
26731947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 28142443 - 28142509
Alignment:
| Q |
165 |
attggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgca |
231 |
Q |
| |
|
||||||| |||| |||| |||| ||||||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
28142443 |
attggataattgtaagtctcttcaagaaattagggggattccgccaaatttaaaacatgtgtctgca |
28142509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 2187668 - 2187792
Alignment:
| Q |
170 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
269 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| ||||||| |||||||||| | ||||| ||| |||||||||| || | || ||| |
|
|
| T |
2187668 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaacgtttgtctgcattacaatgcaattcactgacttcctcatgtagaagcat |
2187767 |
T |
|
| Q |
270 |
gctattgaatcaggttttgtgtttt |
294 |
Q |
| |
|
|||| | | ||||||||||| |||| |
|
|
| T |
2187768 |
gctacttagtcaggttttgtatttt |
2187792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 26851306 - 26851402
Alignment:
| Q |
190 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttt |
286 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || ||||||||| | ||||||||||||| |||||| ||| || ||| |||||| |||||||| |
|
|
| T |
26851306 |
gaaattagagggattccaccgaatctaaattacctgtctgcaatagattgcaaatcattgagttcctcaagcagaagaatgttattgagtcaggttt |
26851402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 28 - 447
Target Start/End: Complemental strand, 55742 - 55317
Alignment:
| Q |
28 |
aaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccag |
127 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
55742 |
aaatgcaacttatcagataaatttcttccaatacttgtcatgtggtctgctaatgtgaaaactttagacctatcaggaaataatttcacaattcttccgg |
55643 |
T |
|
| Q |
128 |
aatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtc |
227 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
55642 |
aatgcatgaaagattgtcgctttttgtggtttcttaaattggatgattgcaagtgccttcgagaaattagagggattccaccaaatgtaaaacacttgtc |
55543 |
T |
|
| Q |
228 |
tgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttg---tgtttt---tattccttgtatttgacttaatatttt |
321 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| | |
|
|
| T |
55542 |
tgcaatacgctgcaaatcattgacttcctcgtgcaaacacatgctattgaatcaggttttgttttgttttttgttttccttgtatttgacttaatattat |
55443 |
T |
|
| Q |
322 |
ataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagt |
421 |
Q |
| |
|
|||| | |||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
55442 |
ataatactgtttactctttgatttatttatggctaacaggatatgcatgaggctggacaaaccatgttttgtttgccgggatttgcaaggattccagagt |
55343 |
T |
|
| Q |
422 |
ggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||| | |||||||||||||||| |
|
|
| T |
55342 |
ggtttgagcaccaaaacatgggacat |
55317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 28 - 447
Target Start/End: Original strand, 46188 - 46613
Alignment:
| Q |
28 |
aaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||| ||||||||| ||| | ||||||||||||||||| |
|
|
| T |
46188 |
aaatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccag |
46287 |
T |
|
| Q |
128 |
aatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtc |
227 |
Q |
| |
|
||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
46288 |
aatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtc |
46387 |
T |
|
| Q |
228 |
tgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtt-ttta-----ttccttgtatttgacttaatatttt |
321 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
46388 |
tgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgtttattgttttccttgtatttgacttaatattat |
46487 |
T |
|
| Q |
322 |
ataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagt |
421 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||| | |||||||||||||||||||| | |
|
|
| T |
46488 |
ataatattgtttactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagatt |
46587 |
T |
|
| Q |
422 |
ggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
46588 |
ggtttgatcaccaaagcatgggacat |
46613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 447
Target Start/End: Original strand, 39210 - 39635
Alignment:
| Q |
31 |
tgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccagaat |
130 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39210 |
tgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaat |
39309 |
T |
|
| Q |
131 |
gcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgc |
230 |
Q |
| |
|
|||||||||||||||||||||| || | |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
39310 |
gcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgc |
39409 |
T |
|
| Q |
231 |
aaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtt---------ttgtgtttttattccttgtatttgacttaatatttt |
321 |
Q |
| |
|
||||| |||||||||||||| ||||||| || |||||||||||||||||||||| || | ||| | ||||||||||||| ||||||||||| |
|
|
| T |
39410 |
aaaatactgcaaatcattgatttcctcggccagaaacatgctattgaatcaggttttttttttattttttttgttttccttgtatttgtcttaatatttt |
39509 |
T |
|
| Q |
322 |
ataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagt |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||| | ||||||| ||||||||||||| |
|
|
| T |
39510 |
ataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagt |
39609 |
T |
|
| Q |
422 |
ggtttgatcgccaaaacatgggacat |
447 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
39610 |
ggtttgatcatcaaaacatgggacat |
39635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 16693894 - 16694034
Alignment:
| Q |
91 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
190 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| |||||||| || | ||||||| | ||||| ||| |||| |||| || ||||||| |
|
|
| T |
16693894 |
ttagacctatcgaggaatagtttcacaatacttccagaatttatcaaagaatgccactttttgattacgcttaatttgaatgactgcacatgtcttcgag |
16693993 |
T |
|
| Q |
191 |
aaattagagggattccaccaaatttaaaatatttgtctgca |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
16693994 |
aaattagagggattcctccaaatttaaaacgtttgtctgca |
16694034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 5088454 - 5088354
Alignment:
| Q |
111 |
tttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccacca |
210 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||||||||| | | || ||| |||| |||| ||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
5088454 |
tttcaaaattcttccagaatgcctcaaagaatgtcgctttctatggagccttcaattgaatgaatgcaagtctcttcaagaaattagagggattcctcca |
5088355 |
T |
|
| Q |
211 |
a |
211 |
Q |
| |
|
| |
|
|
| T |
5088354 |
a |
5088354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 12311 - 12430
Alignment:
| Q |
170 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
269 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| |||||||| ||||||||| | |||||| |||||||||||||| || | || ||| |
|
|
| T |
12311 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat |
12410 |
T |
|
| Q |
270 |
gctattgaatcaggttttgt |
289 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
12411 |
gctacttactcaggttttgt |
12430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 26138796 - 26138892
Alignment:
| Q |
190 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttt |
286 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | || ||||||| | ||||| |||||||||||||| || | || ||| |||||| |||||||| |
|
|
| T |
26138796 |
gaaattaaagggattccaccaaatctaaaaaagttttctgcaatacaatgcaagtcattgacttcctcatgtataaggatgttattgagtcaggttt |
26138892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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