View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_23 (Length: 450)
Name: NF6594_low_23
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 8458316 - 8457896
Alignment:
| Q |
15 |
atcatgattatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458316 |
atcatgattatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttg |
8458217 |
T |
|
| Q |
115 |
acagcttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgagactgcatgcgcatcaaagtttgtacaaagaaattaactta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
8458216 |
acagcttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgaaactgcatgcgtatcaaagtttgtacaaagaaattaactta |
8458117 |
T |
|
| Q |
215 |
ttgactagcaaaaaagggtaagatctaactgcaatgcttagttttcaaaccttcatttaacatacttaggacaaaatgttgggtacctggagaattccct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458116 |
ttgactagcaaaaaagggtaagatctaactgcaatgcttagttttcaaaccttcatttaacatacttaggacaaaatgttgggtacctggagaattccct |
8458017 |
T |
|
| Q |
315 |
ttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattgattattcgttgtctatgactatctgcaaagagtaaaaaataagagag |
414 |
Q |
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| T |
8458016 |
tcgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattgattattcgttgtctatggttatctgcaaagagtaaaaaataagagag |
8457917 |
T |
|
| Q |
415 |
ctgagtgtaaaatgaaaaaga |
435 |
Q |
| |
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||||||||||||||||||||| |
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| T |
8457916 |
ctgagtgtaaaatgaaaaaga |
8457896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 269 - 435
Target Start/End: Original strand, 6827278 - 6827444
Alignment:
| Q |
269 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
368 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
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| T |
6827278 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
6827377 |
T |
|
| Q |
369 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaaga |
435 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| |||||| |
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| T |
6827378 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaaga |
6827444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 6827150 - 6827279
Alignment:
| Q |
39 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
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| T |
6827150 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccagaattctatcttgacagaattcctacaaataatggta |
6827249 |
T |
|
| Q |
138 |
acatgaaaaaatgaattcaatacctgatat |
167 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
6827250 |
acatgagaaaatgaattcaatacctgatat |
6827279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 9822866 - 9822700
Alignment:
| Q |
269 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
368 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
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| T |
9822866 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
9822767 |
T |
|
| Q |
369 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaaga |
435 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| |||||| |
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|
| T |
9822766 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaaga |
9822700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 9822994 - 9822865
Alignment:
| Q |
39 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
137 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
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| T |
9822994 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccataattctatcttgacagaattcctacaaataatggta |
9822895 |
T |
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| Q |
138 |
acatgaaaaaatgaattcaatacctgatat |
167 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
9822894 |
acatgagaaaatgaattcaatacctgatat |
9822865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 25802572 - 25802704
Alignment:
| Q |
31 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
25802572 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacagaattcctacaaa |
25802671 |
T |
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| Q |
130 |
taatggtaacatgaaaaaatgaattcaatacct |
162 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
25802672 |
taatggtaacatgagaaaatgaattcaatacct |
25802704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 18361145 - 18361263
Alignment:
| Q |
38 |
ctgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgaca-gcttcctacaaataatggt |
136 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
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|
| T |
18361145 |
ctgatcttgaaggccaccattcaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacatgattcctacaaataatggt |
18361244 |
T |
|
| Q |
137 |
aacatgaaaaaatgaattc |
155 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
18361245 |
aacatgagaaaatgaattc |
18361263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 18361265 - 18361345
Alignment:
| Q |
270 |
tttaacatacttaggacaaaatgttgggtacctggaga--attccctttgttgtgaagtcaaatgcagttgaaagctgtcc |
348 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||| |
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| T |
18361265 |
tttaacatacttaagacaaaatgctgggtacctggagatcattcccttggctgtgaagtcatatgcagttgaaagttgtcc |
18361345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 27963964 - 27964043
Alignment:
| Q |
39 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27963964 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacag |
27964043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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