View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_24 (Length: 440)
Name: NF6594_low_24
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 8776575 - 8776984
Alignment:
| Q |
20 |
cggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatc |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8776575 |
cggaaaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacaaaaaaagaacgccatc |
8776674 |
T |
|
| Q |
120 |
tagaaacacggcagggggtggtcaaagcatattactctaaaggtctcagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtatt |
219 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776675 |
tagaaacccggcggggggtggtcaaagcatattactctaaaggtcttagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtatt |
8776774 |
T |
|
| Q |
220 |
cttctggcttcttagattttcttcttttatttataaaaatggtatagcttaaagtttgatcctaaggatgcaatcaagattcattgctatatattcaatc |
319 |
Q |
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| T |
8776775 |
cttctggcttcttagattttcttcttttatttataaaaatggtatagcttaaagtttgatcctaaggatgcaatcaagattcattgctctatattcaatc |
8776874 |
T |
|
| Q |
320 |
atcaccgctaccattgcaaaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagattttagagaagagaaggttatacactt |
419 |
Q |
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| T |
8776875 |
atcaccactaccattgcaaaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagcttttagagaagagaaggttatacactt |
8776974 |
T |
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| Q |
420 |
catctttcat |
429 |
Q |
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| T |
8776975 |
catctttcat |
8776984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 338 - 426
Target Start/End: Original strand, 8782876 - 8782965
Alignment:
| Q |
338 |
aaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagattttaga-gaagagaaggttatacacttcatcttt |
426 |
Q |
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| T |
8782876 |
aaaccctcacttgatgtgttgggtggaccaaccaaaacatagttgaattatatgatttaagattaagagaaggttatacacttcatcttt |
8782965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 8788936 - 8789015
Alignment:
| Q |
349 |
tgatgtgttgggtggaccaacgaaaacttagttgaattataagattttaga-gaagagaaggttatacacttcatctttc |
427 |
Q |
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| T |
8788936 |
tgatgtgttgggtggaccaaccaaaacatagttgaattatatgatttgtgattaagagaaggttatacacttcatctttc |
8789015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 8782568 - 8782617
Alignment:
| Q |
21 |
ggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtat |
70 |
Q |
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| T |
8782568 |
ggagaagacttttggaacatcttgacaggccttatgaccagaaagagtat |
8782617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 2541097 - 2540893
Alignment:
| Q |
21 |
ggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatct |
120 |
Q |
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|||||| |||||||||||||||||| |||||||||||| || ||||||||||||| ||||| ||||||| |||||| || ||||||||||||| ||||| |
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| T |
2541097 |
ggagaacacttatggaatgtcttgaaaggccttatgacgaagaagagtatgatgaccttctgctcaaagtatctaaacaagcgaaaaaagaacgtcatct |
2540998 |
T |
|
| Q |
121 |
agaaacacggcagggggtggtcaaagcatattactctaaaggtctcagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtattc |
220 |
Q |
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||||||||||||||||||||| ||| ||||| ||| | ||||||||||||||||||||||||||| | |||| ||||||||||||| || |||||||||| |
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| T |
2540997 |
agaaacacggcagggggtggttaaatcatatcactgtgaaggtctcagcaaatcatatcttgatacgcaccccggtaggtccatattttctcaagtattc |
2540898 |
T |
|
| Q |
221 |
ttctg |
225 |
Q |
| |
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||||| |
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|
| T |
2540897 |
ttctg |
2540893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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