View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_28 (Length: 435)
Name: NF6594_low_28
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 41339148 - 41339540
Alignment:
| Q |
18 |
catttgcttaccatgaggttgatatttttcacccttctttcacctgcaaatgttctatttcacnnnnnnngctggttcaattaagcataatatattttta |
117 |
Q |
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| T |
41339148 |
catttgcttaccatgaggttaatatttttcacccttctttcacctgcaaatgttctatttca-----------------attaagcataatatattttta |
41339230 |
T |
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| Q |
118 |
atgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaattcaaggggaagatcttctagaccc |
217 |
Q |
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| T |
41339231 |
atgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaattcaaggggaagatcttctagaccc |
41339330 |
T |
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| Q |
218 |
ggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcattacagatggaaaaatgagcaaccag |
317 |
Q |
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| T |
41339331 |
ggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccag |
41339430 |
T |
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| Q |
318 |
gtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataag |
417 |
Q |
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| T |
41339431 |
gtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataag |
41339530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 36136465 - 36136541
Alignment:
| Q |
260 |
agggaaaggttttccagccgtggtcgaaatcattacagatggaaaaatgagcaaccaggtatctaaatggttatttc |
336 |
Q |
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| T |
36136465 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
36136541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 36136571 - 36136653
Alignment:
| Q |
334 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa |
416 |
Q |
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| T |
36136571 |
ttcagttatatttgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataa |
36136653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 22629768 - 22629905
Alignment:
| Q |
161 |
atatctgagagacgagggaatttgaattttaattcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaa |
260 |
Q |
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| T |
22629768 |
atatccgagagaagagggaattgaaatttcaattcagcggaaaggtcttcccgacccggttagtttcacaggaaaccgaaaaatttgaactctaatttga |
22629867 |
T |
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| Q |
261 |
gggaaaggttttccagccgtggtcgaaatcattacaga |
298 |
Q |
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| T |
22629868 |
agtaaaggttttccagccttggtcgaaatcattacaga |
22629905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 22629677 - 22629724
Alignment:
| Q |
93 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagata |
141 |
Q |
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| T |
22629677 |
ttcaattaagcataatatatttt-aatgtttaaattttatgcagagata |
22629724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 22629970 - 22630048
Alignment:
| Q |
334 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattata |
412 |
Q |
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|||| ||||||||||||| |||| |||| || || ||||||| |||||||||||||||||||| |||||| ||||||| |
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| T |
22629970 |
ttcagttagatttgtaactaactttttcacttaaatttttcataaggatatcattataaatatataactattgattata |
22630048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 22630454 - 22630400
Alignment:
| Q |
88 |
gctggttcaattaagcataatatatttttaatgtttaaattttatgcagagatat |
142 |
Q |
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| T |
22630454 |
gctgattcaattaagcgtaatatattgtaaatgtttaaattttatgcagagatat |
22630400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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