View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_low_3 (Length: 732)
Name: NF6594_low_3
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 13871103 - 13871558
Alignment:
| Q |
1 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871103 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
13871202 |
T |
|
| Q |
101 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871203 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacact |
13871302 |
T |
|
| Q |
201 |
tgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871303 |
tgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtga |
13871402 |
T |
|
| Q |
301 |
tgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttcctcgccttc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
13871403 |
tgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttc |
13871502 |
T |
|
| Q |
384 |
gtatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871503 |
atatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
13871558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 14011228 - 14011683
Alignment:
| Q |
1 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011228 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
14011327 |
T |
|
| Q |
101 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011328 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacact |
14011427 |
T |
|
| Q |
201 |
tgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011428 |
tgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtga |
14011527 |
T |
|
| Q |
301 |
tgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttcctcgccttc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
14011528 |
tgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttc |
14011627 |
T |
|
| Q |
384 |
gtatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011628 |
atatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
14011683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 441 - 713
Target Start/End: Original strand, 13872057 - 13872307
Alignment:
| Q |
441 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctcatgtgtgatttagtgtcgaaaaggtatgtgtcctacat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
13872057 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca------at---gtgtcgaa-------------tacat |
13872134 |
T |
|
| Q |
541 |
aggaatgaatgggaagacctcatgggtaaagtctgaatcagttgtgttatagcctggataagtggtgtggtatcttggactatttgtggcgaagcctata |
640 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13872135 |
aggaatgaacgggaagacctcatgggtaaagtctgaatcagttgtggtatagcctggataagtggtgtggtaccttggactatttgtggcgaagcctata |
13872234 |
T |
|
| Q |
641 |
tcttgtgacgcctgcgatcaatctttgcaggaagctttctaggccgtagaagcctcgactcacccttagtcat |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872235 |
tcttgtgacgcctgcgatcaatctttgcaggaagctttctaggccgtagaagcctcgactcacccttagtcat |
13872307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 441 - 713
Target Start/End: Original strand, 14012182 - 14012432
Alignment:
| Q |
441 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctcatgtgtgatttagtgtcgaaaaggtatgtgtcctacat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
14012182 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca------at---gtgtcgaa-------------tacat |
14012259 |
T |
|
| Q |
541 |
aggaatgaatgggaagacctcatgggtaaagtctgaatcagttgtgttatagcctggataagtggtgtggtatcttggactatttgtggcgaagcctata |
640 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14012260 |
aggaatgaacgggaagacctcatgggtaaagtctgaatcagttgtggtatagcctggataagtggtgtggtaccttggactatttgtggcgaagcctata |
14012359 |
T |
|
| Q |
641 |
tcttgtgacgcctgcgatcaatctttgcaggaagctttctaggccgtagaagcctcgactcacccttagtcat |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012360 |
tcttgtgacgcctgcgatcaatctttgcaggaagctttctaggccgtagaagcctcgactcacccttagtcat |
14012432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University