View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_31 (Length: 421)
Name: NF6594_low_31
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 48450177 - 48450583
Alignment:
| Q |
18 |
aatttatgatgtagagaactgtccatatctgatttggaacttttagtataatggtggagaaggaaa----------aagagaacaggttaaggatatccc |
107 |
Q |
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| T |
48450177 |
aatttatgatgtagagaactgtccatatctgatttggaacttttagtataatggtggagaaggaaagtgaaggaaaacgagaacaggttaaggatatccc |
48450276 |
T |
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| Q |
108 |
gtgattcttgatttggaaaatcatccatttcttcatcttaataactcattaaatttattgtctttgttttagtgtggagtttccaattgttgatttagtt |
207 |
Q |
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| T |
48450277 |
gtgattcttgatttggaaaatcatccatttcttcatcttaataactcattaaatttattgtctttgttttagtgtggagtttccaattgttgatttagtt |
48450376 |
T |
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| Q |
208 |
attgcatagaagtgctattagaagtttgttataagttagttttaactgcatccacttttgttagttagtcacaaattgggtgtaggagaaatggttgtag |
307 |
Q |
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| T |
48450377 |
attgcatagaagtgctattagaagtttgttataagttagttttaactgcatccacttttgttagttagtcacaaattgggtgtaggagaaatggttgtag |
48450476 |
T |
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| Q |
308 |
gaagcatgatgaaaacaacatgacacttttataactgtatacacttctggcacttttttcaaactagcaggccttgatttcattttaattttatattgtc |
407 |
Q |
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| T |
48450477 |
gaagcatgatgaaaacaacatgacacttttataaccgtatacacttctggcacttttttcaaactagcaggccttgatttcattttaattttatattgtc |
48450576 |
T |
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| Q |
408 |
tctgctc |
414 |
Q |
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| T |
48450577 |
tctgctc |
48450583 |
T |
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