View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_32 (Length: 416)
Name: NF6594_low_32
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 9194416 - 9194812
Alignment:
| Q |
18 |
attggaatctcgtacaccaagctaaatctatgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccacttgacaaatg |
117 |
Q |
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| T |
9194416 |
attggaacctcgtgcaccaagctaaatctatgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccatttgacaaatg |
9194515 |
T |
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| Q |
118 |
taaaacattcatccaaaacacatcttttgcaaacatgggtgtcgtctctggcggtagcgcgagagaagacacccatgagaagccaaaaaatttgcaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9194516 |
taaaacattcatccaaaacacatcttttgccaacatgggtgtcgtctctggcggtagcgcgagagaagacccccatgagaagccaaaaaatttgcaagaa |
9194615 |
T |
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| Q |
218 |
aaacataaaaatgtttcatcatgttctttagattctgaagattctgattcagaatattgtccactgttagnnnnnnnnnnnnnnnnnnnnnngaacgatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9194616 |
aaacataaaaatgtttcatcatgttctttagattctgaagattctgattcagaatattgtccactgttagcaacaaaaacaacaacagcaaagaacgatt |
9194715 |
T |
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| Q |
318 |
cttttgagaaaagagaaccgaagaagagaggaagaaaaccattaacaggaactcaaacaccgatgaaccatgtggaagcagagagacaaaggagaga |
414 |
Q |
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| T |
9194716 |
cttttgagaaaagagaaccgaagaagagaggaagaaaaccattaacaggaactcaaacaccgatgaaccatgtggaagcagagagacaaaggagaga |
9194812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 9213318 - 9213218
Alignment:
| Q |
314 |
gattcttttgagaaaagagaaccgaagaagagaggaagaaaaccattaacaggaactcaaacaccgatgaaccatgtggaagcagagagacaaaggagag |
413 |
Q |
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| T |
9213318 |
gattcttttgagaaaagagaacctaagaagagaggaagaaaaccattatcaggaactcaaacaccaatgaaccatgtggaagcagagagacaaaggagag |
9213219 |
T |
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| Q |
414 |
a |
414 |
Q |
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| |
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| T |
9213218 |
a |
9213218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 9213611 - 9213513
Alignment:
| Q |
18 |
attggaatctcgtacaccaagctaaatctatgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccacttgacaaat |
116 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||| | ||||||||||||| |
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| T |
9213611 |
attggaacctagtacaccaagctaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaatccacttgacaaat |
9213513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 9213406 - 9213354
Alignment:
| Q |
229 |
tgtttcatcatgttctttagattctgaagattctgattcagaatattgtccac |
281 |
Q |
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|||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
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| T |
9213406 |
tgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccac |
9213354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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