View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_33 (Length: 411)
Name: NF6594_low_33
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 39469024 - 39468630
Alignment:
| Q |
1 |
gagtatatccattacactctttttaaaagcattattcaaagagaattggctcaaaattaaataacacgatttaggttggaaagtaaaacatctcaataat |
100 |
Q |
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| T |
39469024 |
gagtatgtccattaaactctttttaaaagcattattcaaagagaattggctcaaaattaaataacacgatttaggttggaaagtaaaacatctcaataat |
39468925 |
T |
|
| Q |
101 |
tgatgagaaaaacacgctaaacaacagttggtattttagcacatgtgtgtcacatcaacaattgatcgacaaatgggcttctttacgatccgtaacgtaa |
200 |
Q |
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| T |
39468924 |
tgatgagaaaaacacgctaaacaacagttggtattttagcacatgtgtgtcacatcaacaattgatcggcaaatgggcttctttacgatccgtaacgtaa |
39468825 |
T |
|
| Q |
201 |
actcacattagataaatcaaatccattcaagatatcattgagaattattagtcctaaatgaagattagatgcaacaatacgaataaacagaaaaattgag |
300 |
Q |
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| T |
39468824 |
actcacattagataaatcaaatccattcaagatatcattgagaattattagtcctaaatgaagattagatgcagcaatacgaataaacagaaaaattgag |
39468725 |
T |
|
| Q |
301 |
atttagaattcagggcagaaacttacagctgaccatccatcaggtgtgttcttcagtatttgcacaggcctgcattaataaaattccatatccat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39468724 |
atttagaattcagggcagaaacttacagctgaccatccatcaggtgtgttcttcagtatttgcacaggcctgcattaataaaattccatatccat |
39468630 |
T |
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