View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_34 (Length: 409)
Name: NF6594_low_34
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 47407133 - 47406743
Alignment:
| Q |
1 |
cagaatccaagcgtgtcggttatgagtccacggagcagacagttagattagggcccaagctcatactgttttgatgttttgctttatttcatggacgtgt |
100 |
Q |
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| T |
47407133 |
cagaatccaagcgtgtcggttatgagtccacggagcagacagttagattagggcccaagctcatactgttttgatgttttgctttatttcatggacgtgt |
47407034 |
T |
|
| Q |
101 |
tgttattttggtttccgactggggtgctccattgtaaaccccaagttacctttatgcctgaacttgagttagtaatgcaagtcatatttccatttatgcc |
200 |
Q |
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| T |
47407033 |
tgttattttggtttccgactggggtgctcccttgtaaaccccaagttacctttatgcctgaacttgagttagtaatatcagtcatatttccatttgtgcc |
47406934 |
T |
|
| Q |
201 |
aaaactgaatccaattcttaatgattcgtaaacttcatttctaattcaaattgaaattcagctgtttatttgtccagtcttcaattgaatttcgaggat- |
299 |
Q |
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| T |
47406933 |
aaaactgaatccaattcttaatgattcgtaaacttcatttctaattcaaattgaaattcagctgtttatttgtccagtgttcaattgaatttcgaggatg |
47406834 |
T |
|
| Q |
300 |
gaattattttaagagaggtagaatgtaacgaaccttaattttgtatttttagtaattcaatactagattaagtaaccgaaaccttcaactt |
390 |
Q |
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| T |
47406833 |
gaattattttaagagaggtagaatgtaacgaaccttaattttgtatttttagtaattcaatactggattaagtaaccgaaaccttcaactt |
47406743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 47417608 - 47417498
Alignment:
| Q |
243 |
aattcaaattgaaattcagctgtttatttgtcca---gtcttcaattgaatttcgaggatg-aattattttaagagaggtagaatgtaacgaaccttaat |
338 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| | |||| ||||||||| ||| ||||||||| || |||| |
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| T |
47417608 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgtaacggcccataat |
47417509 |
T |
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| Q |
339 |
tttgtattttt |
349 |
Q |
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||||| ||||| |
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| T |
47417508 |
tttgtcttttt |
47417498 |
T |
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