View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_35 (Length: 397)
Name: NF6594_low_35
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 4197609 - 4198005
Alignment:
| Q |
1 |
aacaaagtcttcccaaaaagatggaaagttgtccccttattactatgatgatggatcagatcatggaagtgttgcttaattttgttaaagggtcgagatt |
100 |
Q |
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| T |
4197609 |
aacaaagtcttcccaaaaagatggaaagttgtccccttattactatgatgatggatcagatcatggaagtgttgcttaattttgttaaagggttgagatt |
4197708 |
T |
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| Q |
101 |
atttgattcagaagaggaggttagggagttctaactaagcttttctttttagttattagtacttattaaagtgtcaactttccctccaagttttccactc |
200 |
Q |
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| T |
4197709 |
atttgattcagaagaggaggttagggagttctaactaagcttttctttttggttattagtacttattaaagtgtcaactttccctccaagttttccactc |
4197808 |
T |
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| Q |
201 |
atgatttgtttgacaaaagttgaaatatcatgactagaagttgatatttattactctgtaaagttggtcgacttcaaggccctccctagttaatttactt |
300 |
Q |
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| T |
4197809 |
atgatttgtttgacaaaagttgaaatatcatgactagaagttgatatttattactctgtaaagttggtcgacttcaaggccctccctagttaatttactt |
4197908 |
T |
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| Q |
301 |
tgggtttgcattaatatctcttatattcagaagtgtgatattctcactgttaaaaagatgcgactcatctctgagaatatgtagtactaatttcaga |
397 |
Q |
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| T |
4197909 |
tgggtttgcattaatatctcttatattcagaagtgtgatattctcactgttaaaaagatgcgactcatctctgagaatatgtagtactaatttcaga |
4198005 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 34921677 - 34921617
Alignment:
| Q |
17 |
aaagatggaaagttgtccccttattactatgatgatggatcagatcatggaagtgttgctt |
77 |
Q |
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||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
34921677 |
aaagatggaaaattatccccttattactatgatgatgcctcagaccatggaagtgttgctt |
34921617 |
T |
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