View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_38 (Length: 386)

Name: NF6594_low_38
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_38
NF6594_low_38
[»] chr1 (8 HSPs)
chr1 (29-296)||(26860146-26860413)
chr1 (320-372)||(26860069-26860121)
chr1 (320-372)||(39426214-39426266)
chr1 (320-369)||(12151771-12151820)
chr1 (320-369)||(50294085-50294134)
chr1 (320-354)||(23861992-23862026)
chr1 (320-372)||(5047400-5047452)
chr1 (320-356)||(52280074-52280110)
[»] chr7 (6 HSPs)
chr7 (234-296)||(22541718-22541780)
chr7 (320-369)||(4888471-4888520)
chr7 (320-369)||(9559076-9559125)
chr7 (320-369)||(25084750-25084799)
chr7 (320-369)||(45260449-45260498)
chr7 (320-372)||(39855832-39855884)
[»] chr2 (7 HSPs)
chr2 (321-372)||(30709115-30709166)
chr2 (320-369)||(28564896-28564945)
chr2 (234-288)||(374628-374682)
chr2 (234-296)||(4446992-4447053)
chr2 (320-369)||(13238685-13238734)
chr2 (320-369)||(23259509-23259558)
chr2 (320-369)||(35316829-35316878)
[»] chr6 (8 HSPs)
chr6 (320-372)||(7215871-7215923)
chr6 (320-369)||(1249168-1249217)
chr6 (320-369)||(4804452-4804501)
chr6 (320-369)||(17944166-17944215)
chr6 (320-369)||(21159391-21159440)
chr6 (320-369)||(27826542-27826591)
chr6 (320-368)||(7162088-7162136)
chr6 (320-368)||(12412641-12412689)
[»] chr3 (5 HSPs)
chr3 (320-368)||(27033655-27033703)
chr3 (234-296)||(1995361-1995422)
chr3 (320-369)||(34373607-34373656)
chr3 (320-369)||(19830453-19830502)
chr3 (320-369)||(43719969-43720018)
[»] chr8 (7 HSPs)
chr8 (320-369)||(28069723-28069772)
chr8 (320-369)||(30426691-30426740)
chr8 (320-369)||(28318924-28318973)
chr8 (320-369)||(36748513-36748562)
chr8 (320-369)||(41511266-41511315)
chr8 (320-369)||(44859189-44859238)
chr8 (320-356)||(36991360-36991396)
[»] chr5 (11 HSPs)
chr5 (320-369)||(4895757-4895806)
chr5 (320-369)||(14349807-14349856)
chr5 (320-369)||(18625443-18625492)
chr5 (320-369)||(32129639-32129688)
chr5 (320-369)||(35660631-35660680)
chr5 (320-369)||(4592804-4592853)
chr5 (320-369)||(29340999-29341048)
chr5 (320-369)||(37266735-37266784)
chr5 (320-369)||(40753184-40753233)
chr5 (320-356)||(36290606-36290642)
chr5 (320-368)||(39902419-39902467)
[»] chr4 (13 HSPs)
chr4 (320-369)||(5416487-5416536)
chr4 (320-369)||(5763184-5763233)
chr4 (320-369)||(19901940-19901989)
chr4 (233-296)||(5815397-5815460)
chr4 (320-369)||(3952192-3952241)
chr4 (320-369)||(18207062-18207111)
chr4 (320-369)||(34778425-34778474)
chr4 (263-296)||(36532570-36532603)
chr4 (320-369)||(56558283-56558332)
chr4 (320-356)||(12241443-12241479)
chr4 (320-368)||(24073620-24073668)
chr4 (320-368)||(38079743-38079791)
chr4 (320-356)||(56269111-56269147)
[»] scaffold0012 (1 HSPs)
scaffold0012 (320-369)||(208067-208116)
[»] scaffold0008 (1 HSPs)
scaffold0008 (320-369)||(9223-9272)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 296
Target Start/End: Complemental strand, 26860413 - 26860146
Alignment:
Q  29 accaaatgagcttgctacaaaagttatattactttgctcctaaaagagataaaaattgttgttcccactnnnnnnnntgttatgacaaacctgcaaaata 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |        |||||||||||||||||||||||    
T  26860413 accaaatgagcttgctacaaaagttatattactttgctcctgaaagagataaaaattgttgttcccattaaaaaaaatgttatgacaaacctgcaaaata 26860314  T
Q  129 ccattttacccacaactatagctaactactattcgatagccaactgcatttaagtgcagttgctgccggattgtggaaggttactactagactctgtcaa 228  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  26860313 ccattttacccgcaactatagctaactactattcggtagccaactgcatttaagtgcagttgctgccagattgtggaaggttactactggactctgtcaa 26860214  T
Q  229 tctaagagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagatatagactca 296  Q
    |||||||||||| ||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  26860213 tctaagagtcaatatcctctccattttgtactacctctgtttcttccattttaagagatatagactca 26860146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 26860121 - 26860069
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26860121 taattaatgattgtgggatccacttagtgataggacctactatctattttatg 26860069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 39426214 - 39426266
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    ||||||||||| |||||| ||| |||||||||||||| |||||||||||||||    
T  39426214 taattaatgatagtgggacccaattagtggtaggacccactatctattttatg 39426266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 12151771 - 12151820
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  12151771 taattaatgatggtgggacccacttagtggtaggacccacaatctatttt 12151820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 50294134 - 50294085
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| || |||||||||||||||||||||| || |||||||||    
T  50294134 taattaatgatggtaggatccacttagtggtaggacccaccatctatttt 50294085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 23862026 - 23861992
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtagga 354  Q
    ||||||||||| |||||||||||||||||||||||    
T  23862026 taattaatgatggtgggatccacttagtggtagga 23861992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 5047452 - 5047400
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    ||||||||||| |||||| |||| ||||||||||| | | |||||||||||||    
T  5047452 taattaatgatggtgggacccacatagtggtaggatccattatctattttatg 5047400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 52280110 - 52280074
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacc 356  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  52280110 taattaatgatggtgggatccacttagtgataggacc 52280074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 22541718 - 22541780
Alignment:
Q  234 gagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagatatagactca 296  Q
    ||||||||||| ||||||||||||||   |||| |||||||||||||||||||||||||||||    
T  22541718 gagtcaagatcctctccattttgtacattcttcatttcttccatttgaagagatatagactca 22541780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 4888471 - 4888520
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| | |||||||||||||||| ||||||||||||    
T  4888471 taattaatgatggtgggacctacttagtggtaggacccactatctatttt 4888520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 9559125 - 9559076
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  9559125 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 9559076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 25084799 - 25084750
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  25084799 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 25084750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 45260498 - 45260449
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    |||||||||||  |||||||||||||||||||||| | || |||||||||    
T  45260498 taattaatgatgatgggatccacttagtggtaggatccacaatctatttt 45260449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 39855884 - 39855832
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    |||||||||||  ||||| |||||||||||||||||| || |||| |||||||    
T  39855884 taattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatg 39855832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 30709115 - 30709166
Alignment:
Q  321 aattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  30709115 aattaatgatggtgggatccacttagtggtaggacccaatatctattttatg 30709166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 28564896 - 28564945
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  28564896 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 28564945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 374628 - 374682
Alignment:
Q  234 gagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagata 288  Q
    |||| ||||||||||||||||  || |  ||||||||||||||||||||||||||    
T  374628 gagtgaagatcttctccatttattagtctcttcgtttcttccatttgaagagata 374682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 4447053 - 4446992
Alignment:
Q  234 gagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagatatagactca 296  Q
    |||||||||||||||||||||||||    |||| |||| |||||||| |||||||||||||||    
T  4447053 gagtcaagatcttctccattttgtatcttcttcatttc-tccatttggagagatatagactca 4446992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 13238685 - 13238734
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||| ||||||||||| || |||||||||    
T  13238685 taattaatgatggtgggacccacttggtggtaggacccaccatctatttt 13238734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 23259558 - 23259509
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||||||||||||| |||||||| || | |||||||    
T  23259558 taattaatgatggtgggatccacttagtagtaggacccaccagctatttt 23259509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 35316829 - 35316878
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||| | || |||||||||    
T  35316829 taattaatgatggtgggacccacttagtggtaggatccaccatctatttt 35316878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 7215923 - 7215871
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattttatg 372  Q
    ||||||||||| |||||| ||| |||||||||||||| |||||||||||||||    
T  7215923 taattaatgatagtgggacccaattagtggtaggacccactatctattttatg 7215871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 1249217 - 1249168
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  1249217 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 1249168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 4804452 - 4804501
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  4804452 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 4804501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 17944166 - 17944215
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||||||    
T  17944166 taattaatgatggtgggacccatttagtggtaggacctaccatctatttt 17944215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 21159440 - 21159391
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  21159440 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 21159391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 27826542 - 27826591
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  27826542 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 27826591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 7162088 - 7162136
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| |||||| ||||||||| |||||||| || ||||||||    
T  7162088 taattaatgatggtgggacccacttagtagtaggacccaccatctattt 7162136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 12412641 - 12412689
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| |||| | |||||||||||||||||| || ||||||||    
T  12412641 taattaatgatggtggaacccacttagtggtaggacccaccatctattt 12412689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 27033655 - 27033703
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  27033655 taattaatgatggtgggatccacttagtggtaggacccaccatctattt 27033703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 1995361 - 1995422
Alignment:
Q  234 gagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagatatagactca 296  Q
    |||||||||||||||||||||||||    |||| |||| ||||||||||||||||||||||||    
T  1995361 gagtcaagatcttctccattttgtatcctcttcatttc-tccatttgaagagatatagactca 1995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 34373656 - 34373607
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  34373656 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 34373607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 19830502 - 19830453
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| ||||||| |||||||||| || |||||||||    
T  19830502 taattaatgatggtgggacccacttaatggtaggacccaccatctatttt 19830453  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 43720018 - 43719969
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || || ||||||    
T  43720018 taattaatgatggtgggacccacttagtggtaggacccacaatttatttt 43719969  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 28069723 - 28069772
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  28069723 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 28069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 30426740 - 30426691
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  30426740 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 30426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 28318973 - 28318924
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| || ||| |||||||||||||||||| ||||||| ||||    
T  28318973 taattaatgatggttggacccacttagtggtaggacccactatctttttt 28318924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 36748562 - 36748513
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||||||||||| ||||||||||  || ||||||||    
T  36748562 taattaatgatggtgggatccacttaatggtaggacccgctgtctatttt 36748513  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 41511266 - 41511315
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||| | |||||||||| ||||||| ||||||||||||    
T  41511266 taattaatgatggtggaaaccacttagtgataggacccactatctatttt 41511315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 44859238 - 44859189
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||| ||| || |||||||||    
T  44859238 taattaatgatggtgggacccacttagtggtagaacccaccatctatttt 44859189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 36991360 - 36991396
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacc 356  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  36991360 taattaatgatggtgggacccacttagtggtaggacc 36991396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 4895806 - 4895757
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  4895806 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 4895757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 14349807 - 14349856
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  14349807 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 14349856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 18625492 - 18625443
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  18625492 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 18625443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 32129688 - 32129639
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  32129688 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 32129639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 35660680 - 35660631
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  35660680 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 35660631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 4592804 - 4592853
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| ||||||||||||| |||| || |||||||||    
T  4592804 taattaatgatggtgggacccacttagtggtaagacccaccatctatttt 4592853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 29340999 - 29341048
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctatttt 29341048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 37266735 - 37266784
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| ||||||||||||| |||| || |||||||||    
T  37266735 taattaatgatggtgggacccacttagtggtatgacccaccatctatttt 37266784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 40753233 - 40753184
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || || ||||||    
T  40753233 taattaatgatggtgggacccacttagtggtaggacccaccatatatttt 40753184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 36290606 - 36290642
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacc 356  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  36290606 taattaatgatggtgggatccacttagtgataggacc 36290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 39902419 - 39902467
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| |||| ||||| |||||||||||||| || ||||||||    
T  39902419 taattaatgatggtggaatccatttagtggtaggacccaccatctattt 39902467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 5416536 - 5416487
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  5416536 taattaatgatggtgggacccacttagtggtaggacccacaatctatttt 5416487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 5763233 - 5763184
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  5763233 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 5763184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 19901989 - 19901940
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||    
T  19901989 taattaatgatggtgggacccacttagtggtaggacccaccatctatttt 19901940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 5815460 - 5815397
Alignment:
Q  233 agagtcaagatcttctccattttgtactaccttcgtttcttccatttgaagagatatagactca 296  Q
    |||||||||||| ||||||||||||||   || | ||||||||||||| ||||||||| |||||    
T  5815460 agagtcaagatcctctccattttgtacattctccatttcttccatttggagagatataaactca 5815397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 3952241 - 3952192
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| ||| || |||||||||||||||||| || |||||||||    
T  3952241 taattaatgatggtgagacccacttagtggtaggacccaccatctatttt 3952192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 18207111 - 18207062
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    |||||||||||  ||||| |||||||||||||||||| || |||||||||    
T  18207111 taattaatgatgatgggacccacttagtggtaggacccaccatctatttt 18207062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 34778425 - 34778474
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||||||||| | || |||||||||    
T  34778425 taattaatgatggtgggacccacttagtggtaggatccaccatctatttt 34778474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 36532570 - 36532603
Alignment:
Q  263 cttcgtttcttccatttgaagagatatagactca 296  Q
    |||| |||||||||||||||||||||||||||||    
T  36532570 cttcatttcttccatttgaagagatatagactca 36532603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 56558283 - 56558332
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||||| |||||||||| ||||||| || |||||||||    
T  56558283 taattaatgatggtgggacccacttagtgataggacccaccatctatttt 56558332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 12241479 - 12241443
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacc 356  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  12241479 taattaatgatggtgggacccacttagtggtaggacc 12241443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 24073620 - 24073668
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| | |||| |||||||||||||||||| || ||||||||    
T  24073620 taattaatgatggcgggacccacttagtggtaggacccaccatctattt 24073668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 38079791 - 38079743
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctattt 368  Q
    ||||||||||| |||| ||||||||||| |||||||| || ||||||||    
T  38079791 taattaatgatggtggaatccacttagtagtaggacccaccatctattt 38079743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 56269147 - 56269111
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacc 356  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  56269147 taattaatgatggtgggacccacttagtggtaggacc 56269111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 208067 - 208116
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    |||||||||||  ||||| |||||||||||||||||| || |||||||||    
T  208067 taattaatgatgatgggacccacttagtggtaggacccaccatctatttt 208116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 9272 - 9223
Alignment:
Q  320 taattaatgattgtgggatccacttagtggtaggacctactatctatttt 369  Q
    ||||||||||| |||| |||||||||||||| ||||| || |||||||||    
T  9272 taattaatgatggtggaatccacttagtggttggacccaccatctatttt 9223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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