View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6594_low_4 (Length: 706)
Name: NF6594_low_4
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 13 - 687
Target Start/End: Complemental strand, 2490814 - 2490145
Alignment:
| Q |
13 |
atcatcatgataatcataggataataggattatagtaaatctttagagaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctcta |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490814 |
atcagcatgataatcataggataataggattatagtaaatctttagagaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctcta |
2490715 |
T |
|
| Q |
113 |
acaggtctataagcagcggttgtgcataagttctgcatttaacaattaatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490714 |
acaggtctataagcagcggttgtgcataagttctgcatttaacaattaatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcat |
2490615 |
T |
|
| Q |
213 |
ttgtagattgtaacacgatagttaagttacggccataggaaaacaataatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490614 |
ttgtagattgtaacacgatagttaagttacggccataggaaaacaataatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcg |
2490515 |
T |
|
| Q |
313 |
agttccttaaaatcaagtcccccgtgcaccttctctttagccaaaagggtcctcaatatattttctctgttctctgcagacggtagcccaaccataatcc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2490514 |
agttccttaaaatcaagtcccccgtgcaccttctctttagccaaaagggtcctcaatatattttctctgttctctgcggacggtagcccaaccataatcc |
2490415 |
T |
|
| Q |
413 |
tggtaatcaaagatgaacgatatagtgattaaacgtgcttaaaatactattgaatttcagggtattctgattgttgttgtgtacacacaaatatgccatc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490414 |
tggtaatcaaagatgaacgatatagtgattaaacgtgcttaaaatactatggaatttcagggtattctgattgttgttgtgtacacacaaatatgccatc |
2490315 |
T |
|
| Q |
513 |
aaaacaatatattgcagattttgattttttatgtgcccctcgccccaccacnnnnnnnnnnnnngtatgaatgctaacagtacacactattagacactct |
612 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490314 |
aaaacaatatattgcaaa--ttgattttttatgtgcccctcgccccaccac---aaaaaaaaaagtatgaatgctaacagtacacactattagacactct |
2490220 |
T |
|
| Q |
613 |
ttctcaacataacctatatcattgattgaaaaactaacgggttttgaaaacaggtccacatgaatttgaactaat |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490219 |
ttctcaacataacctatatcattgattgaaaaactaatgggttttgaaaacaggtccacatgaatttgaactaat |
2490145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 41589433 - 41589494
Alignment:
| Q |
90 |
tctcttgctgaattagctctctaacaggtctataagcagcggttgtgcataagttctgcatt |
151 |
Q |
| |
|
||||||||||||| | ||||||||| || | ||||||||| |||||||| |||||||||||| |
|
|
| T |
41589433 |
tctcttgctgaatcaactctctaactggccgataagcagcagttgtgcacaagttctgcatt |
41589494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 410
Target Start/End: Original strand, 41589784 - 41589925
Alignment:
| Q |
269 |
aaaccttcagatcacttccactatatccttcagtcatagttgcgagttccttaaaatcaagtcccccgtgcaccttctctttagccaaaagggtcctcaa |
368 |
Q |
| |
|
||||||| | ||||||||| ||||||| || ||||| || || |||||||||||||||| | | || |||||| ||||| | |||||| ||||| || |
|
|
| T |
41589784 |
aaacctttaaatcacttccggtatatccgtctgtcatggtcgcaagttccttaaaatcaatttctttgtccaccttttcttttgacaaaagagtccttaa |
41589883 |
T |
|
| Q |
369 |
tatattttctctgttctctgcagacggtagcccaaccataat |
410 |
Q |
| |
|
|| ||||| |||||||| |||| ||||| || |||||||| |
|
|
| T |
41589884 |
aatcttttccctgttctcaacagatggtagtcctaccataat |
41589925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 45989493 - 45989453
Alignment:
| Q |
270 |
aaccttcagatcacttccactatatccttcagtcatagttg |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
45989493 |
aaccttaagatcacttccactatatccttctgtcatagttg |
45989453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 44936113 - 44936073
Alignment:
| Q |
270 |
aaccttcagatcacttccactatatccttcagtcatagttg |
310 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
44936113 |
aaccttaagatcacttccgctatatccttctgtcatagttg |
44936073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University