View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_41 (Length: 367)
Name: NF6594_low_41
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 41 - 349
Target Start/End: Complemental strand, 33346767 - 33346459
Alignment:
| Q |
41 |
cccaaactgttgaaaagtcaatggtgccaaattggataacaagtgttttattcatgaacatacacaaatataaaattaacataattctatgatataaaaa |
140 |
Q |
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| T |
33346767 |
cccaaactgttgaaaagtcaatggtgccaaattggataacaagtgttttattcatgaacatacacaaatataaaattaacataattctatgatataaaaa |
33346668 |
T |
|
| Q |
141 |
taaatatcttatttactgaaactcaacaaacaatggtacattaacaataccttatgaagtaatgacaccgacacaaatattagagatgagtaataattta |
240 |
Q |
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| T |
33346667 |
taaatatcttatttactgaaactcaacaaacaatggtacattaacaataccttatgaagtaatgacaccgacacaaatattagagatgagtaataattta |
33346568 |
T |
|
| Q |
241 |
taaacataaatacaacttaatgtaactatactcgtcgactttgtgtctgtgtcaacaacacttgacacatcttcgatttgaagtatcagtgcaatgtaga |
340 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33346567 |
taaacataaatacaacttaatgtaaccatactcgtcgactttgtgtctgtgtcaacaacacttgacacatcttcgatttgaagtatcagtgcaatgtaga |
33346468 |
T |
|
| Q |
341 |
cgacgaatc |
349 |
Q |
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||||||||| |
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| T |
33346467 |
cgacgaatc |
33346459 |
T |
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