View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_48 (Length: 336)
Name: NF6594_low_48
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 24119418 - 24119662
Alignment:
| Q |
13 |
aatatatgaaagtgtagagcactaattaaactctatgcaaattgttgaacatgcatgttaatatgattttgtcatgtaagtgtctaagtaattaatatga |
112 |
Q |
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| T |
24119418 |
aatatatgaaagtgtagagcactaattaaactctatgcaaattgttgaacatgcatgttaatatgattttgtcatgtaagtgtctaagtaattaatatga |
24119517 |
T |
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| Q |
113 |
caaaatgtgacaaatgatgcattaagcatttggtattgatttaattaattggttttgttnnnnnnngtacatcattctctctgttgttttatttttagca |
212 |
Q |
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| T |
24119518 |
caaaatgtgacaaatgatgcattaagcatttggtattgat----ttaattggttttgtt-aaaaaagtacatcattctctctgttgttttatttttagca |
24119612 |
T |
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| Q |
213 |
aatattttgctacatatatagtagaattgttattaaatataaattgagaa |
262 |
Q |
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| T |
24119613 |
aatattttgctacatatatagtagaattgttattaaatataaattcagaa |
24119662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 24119866 - 24119939
Alignment:
| Q |
249 |
atataaattgagaaaagnnnnnnngttgcccatgccttatgcttcgtgcccctatggtgaccacaaaatatatg |
322 |
Q |
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| T |
24119866 |
atataaattgagaaaagaaaaaaagttgcccatgccttatgcttcgtgcccctatggtgaccacaaaatatatg |
24119939 |
T |
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