View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_5 (Length: 664)
Name: NF6594_low_5
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 114 - 646
Target Start/End: Complemental strand, 4150452 - 4149923
Alignment:
| Q |
114 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4150353 |
T |
|
| Q |
214 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4150352 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat |
4150253 |
T |
|
| Q |
314 |
aggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaaaca |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||| | | |||| |||||||| ||| |||||| |||||| |
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| T |
4150252 |
aggattacccttaaaatcaaagctacggagacttggagtagataactcgattttccaacattggtgagtaacaaatgtattgat---tcttaaataaaca |
4150156 |
T |
|
| Q |
414 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4150155 |
agtgtgtcacttgatatgaacaggttttgttcttgaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcat |
4150056 |
T |
|
| Q |
514 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattg |
613 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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|
| T |
4150055 |
catcaccactaccatgaaaggcaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattg |
4149956 |
T |
|
| Q |
614 |
atcgtttctacaaagggtaagagatgttaaagt |
646 |
Q |
| |
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|| |||| ||||||||||||||||||||||||| |
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|
| T |
4149955 |
attgtttgtacaaagggtaagagatgttaaagt |
4149923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 114 - 646
Target Start/End: Complemental strand, 4166221 - 4165695
Alignment:
| Q |
114 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4166122 |
T |
|
| Q |
214 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4166121 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat |
4166022 |
T |
|
| Q |
314 |
aggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaaaca |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || | | ||| |||||||| ||| |||||| |||||| |
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|
| T |
4166021 |
aggattacccttaaaatcaaagctacggagacttggagtagataactcgatttt---gcaacgttgaatagcaaatgtattgat---tcttaaataaaca |
4165928 |
T |
|
| Q |
414 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttat |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4165927 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcat |
4165828 |
T |
|
| Q |
514 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattg |
613 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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|
| T |
4165827 |
catcaccactaccatgaaaggcaaagtattttagacacatgctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattg |
4165728 |
T |
|
| Q |
614 |
atcgtttctacaaagggtaagagatgttaaagt |
646 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| |
|
|
| T |
4165727 |
attgtttgtacaaagggtaagagatgttaaagt |
4165695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 13485324 - 13485418
Alignment:
| Q |
263 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
357 |
Q |
| |
|
||||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||| |
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|
| T |
13485324 |
tacatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagata |
13485418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
| Q |
143 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa |
220 |
Q |
| |
|
|||||||| |||||||| |||||| || ||||||||||| ||| || |||||||||||||||||||| |||||||| |
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|
| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa |
13490242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
143 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
210 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||| |||| |
|
|
| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 13490285 - 13490379
Alignment:
| Q |
263 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
357 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||| | ||||||||||| |||| |||| ||||| |||||| ||| |||||||||||||||| |
|
|
| T |
13490285 |
tacatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggagtagata |
13490379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 25597576 - 25597540
Alignment:
| Q |
332 |
aaagctacggagacttggagtagataactcaattttg |
368 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
25597576 |
aaagttacgtagacttggagtagataactcaattttg |
25597540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 32414368 - 32414267
Alignment:
| Q |
250 |
ctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttgg |
349 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||| | ||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
32414368 |
ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg |
32414269 |
T |
|
| Q |
350 |
ag |
351 |
Q |
| |
|
|| |
|
|
| T |
32414268 |
ag |
32414267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 14288277 - 14288381
Alignment:
| Q |
264 |
acatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaa |
363 |
Q |
| |
|
|||||||| ||||||||||||||| | || |||||| |||||| |||| |||| ||||| ||||| |||| ||| |||||||||||| |||| ||||| |
|
|
| T |
14288277 |
acatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctcaa |
14288376 |
T |
|
| Q |
364 |
ttttg |
368 |
Q |
| |
|
|||| |
|
|
| T |
14288377 |
atttg |
14288381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 576
Target Start/End: Original strand, 43863685 - 43863747
Alignment:
| Q |
514 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattca |
576 |
Q |
| |
|
||||| |||| | ||||||||||||||| |||| | ||||| |||||||||| |||||||||| |
|
|
| T |
43863685 |
catcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattca |
43863747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 581
Target Start/End: Complemental strand, 52187280 - 52187235
Alignment:
| Q |
536 |
aaagtattttagacacaagctggttaatgcaggcaaattcagagaa |
581 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
52187280 |
aaagtactttagagacaagttggttaatgctggcaaattcagagaa |
52187235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 7976378 - 7976438
Alignment:
| Q |
461 |
aatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttatcatcacca |
521 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||| ||||||||||| | || ||||||| |
|
|
| T |
7976378 |
aatgatcaaactattcaacttgttaaatgtcgaaaaaggctcagcacgatcattatcacca |
7976438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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