View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_51 (Length: 331)
Name: NF6594_low_51
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38422624 - 38422314
Alignment:
| Q |
1 |
aatgaaccagaggatattttacgtgtccaagatacctattgttgctcctcttcctcgatggctacacacttagctagaacgatattaggagaataaaaat |
100 |
Q |
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| T |
38422624 |
aatgaaccagaggatattttacgtgtccaagatccctattgttgctcctcttcctcgatggctacacacttagctagaacgatattaggagaataaaaat |
38422525 |
T |
|
| Q |
101 |
agcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactctaatatgaacaactcactttaaagagtaacgtgagta |
200 |
Q |
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| T |
38422524 |
agcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactctaatgtgaacaactcactttaaagagtaacgtgagta |
38422425 |
T |
|
| Q |
201 |
atatcaattatcgataaacaaattaataattgaattttgaaatataccatgagtttactttcgattcattgacaatctacgatgactttgcacagatgtc |
300 |
Q |
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| T |
38422424 |
atatcaattatcgataaaaaaattaataattaaattttgaaatataccatgagtttactttcgatacattgacaatctacgatgactttgcacagatgtc |
38422325 |
T |
|
| Q |
301 |
cgatcagatct |
311 |
Q |
| |
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||||||||||| |
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| T |
38422324 |
cgatcagatct |
38422314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 14314472 - 14314414
Alignment:
| Q |
169 |
tgaacaactcactttaaagagtaacgtgagtaatatcaattatcgataaacaaattaat |
227 |
Q |
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| T |
14314472 |
tgaacaactcacttcaaagaataaagtgagtgatatcaactatcgatgaacatattaat |
14314414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 43034330 - 43034367
Alignment:
| Q |
170 |
gaacaactcactttaaagagtaacgtgagtaatatcaa |
207 |
Q |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
43034330 |
gaacaattcactttaaagagtaaagtgagtaatatcaa |
43034367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 52849416 - 52849456
Alignment:
| Q |
169 |
tgaacaactcactttaaagagtaacgtgagtaatatcaatt |
209 |
Q |
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|||||||||||||||| | ||||| |||||||||||||||| |
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| T |
52849416 |
tgaacaactcactttagaaagtaaagtgagtaatatcaatt |
52849456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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