View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_56 (Length: 304)

Name: NF6594_low_56
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_56
NF6594_low_56
[»] chr7 (1 HSPs)
chr7 (17-304)||(40254944-40255231)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 40255231 - 40254944
Alignment:
Q  17 tgctacactcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatgaagtgaaaggctagaggaa 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255231 tgctaaactcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatgaagtgaaaggctagaggaa 40255132  T
Q  117 gcaacatcatcaatatttgcatttactattccaaatttgttttgatgaannnnnnnnnnnnnnaaggccatgttgcatgattcaactattcttgtgttag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  40255131 gcaacatcatcaatatttgcatttactattccaaatttgttttgatgaattttttgcttttttaaggccatgttgcatgattcaactattcttgtgttag 40255032  T
Q  217 atgaattcattgaggaaattttcttctcattatttgattggaggctagacacagataaatcacatgaatgttgttgctttggatgatc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  40255031 atgaattcattgaggaaattttcttctcattatttgattggaggctagacaaagataaatcacatgaaagttgttgctttggatgatc 40254944  T

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