View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6594_low_58 (Length: 287)

Name: NF6594_low_58
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6594_low_58
NF6594_low_58
[»] chr7 (4 HSPs)
chr7 (21-270)||(4996363-4996622)
chr7 (136-213)||(4997145-4997223)
chr7 (136-199)||(33223193-33223257)
chr7 (160-219)||(48850478-48850537)
[»] chr4 (5 HSPs)
chr4 (125-220)||(53687698-53687794)
chr4 (139-198)||(55245990-55246049)
chr4 (139-212)||(9041876-9041950)
chr4 (124-158)||(53688489-53688523)
chr4 (133-213)||(53894373-53894454)
[»] chr6 (5 HSPs)
chr6 (145-220)||(4221594-4221669)
chr6 (136-199)||(19802550-19802614)
chr6 (160-217)||(1634940-1634997)
chr6 (137-198)||(4222773-4222834)
chr6 (160-213)||(19803249-19803302)
[»] chr8 (3 HSPs)
chr8 (138-219)||(44006380-44006462)
chr8 (125-181)||(17773007-17773064)
chr8 (136-199)||(44007544-44007608)
[»] chr1 (2 HSPs)
chr1 (160-218)||(31868332-31868390)
chr1 (125-181)||(19445001-19445058)
[»] chr2 (2 HSPs)
chr2 (121-218)||(22436388-22436485)
chr2 (138-187)||(22424797-22424846)
[»] scaffold0272 (1 HSPs)
scaffold0272 (138-212)||(8895-8969)
[»] chr3 (2 HSPs)
chr3 (125-199)||(45244065-45244140)
chr3 (160-208)||(22239256-22239304)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 4996622 - 4996363
Alignment:
Q  21 gctacctgttaagaatcctcacaattccnnnnnnntcatatacatgctccatggtagttaactatcgctagttaactactgctggagcaannnnnnnnnn 120  Q
    ||||||||||||||||||||||||||||       |||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||              
T  4996622 gctacctgttaagaatcctcacaattccaaaaaaatcatatacatgctccacggtagttaattatcgctagttaactaccgctgaagcaatttttttttt 4996523  T
Q  121 gt----------gctgtatatttggaacggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagc 210  Q
     |          ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  4996522 ttttttttttatgctgtatatttggaacggtagttaactaccgccagagtaaaaacgtcattttcatgtgtcaatatgacgttttgaatgtcagaaaagc 4996423  T
Q  211 aatcttcttgttatttttgtctattgttttatgtttttgtagagatctattgtaaatatt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996422 aatcttcttgttatttttgtctattgttttatgtttttgtagagatctattgtaaatatt 4996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 4997145 - 4997223
Alignment:
Q  136 aacggtagttaactaccgtcggaa-taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaat 213  Q
    ||||| |||||||||||| ||||  |||||||||||||| ||||||||||||||| ||||||||| | | |||||||||    
T  4997145 aacggcagttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaat 4997223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 33223193 - 33223257
Alignment:
Q  136 aacggtagttaactaccgtcgga-ataaaaacgtcattttcatgtgtcaatatgatgttttgaat 199  Q
    |||||||||||||||||||||||  | |||| |||||||  |||||||||||||| |||||||||    
T  33223193 aacggtagttaactaccgtcggaggttaaaatgtcatttctatgtgtcaatatgacgttttgaat 33223257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 48850537 - 48850478
Alignment:
Q  160 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttctt 219  Q
    |||||| ||||||||||||||||||||| | ||||||||| | ||||| ||||| |||||    
T  48850537 taaaaatgtcattttcatgtgtcaatataacgttttgaatgtcagaaatgcaattttctt 48850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 53687794 - 53687698
Alignment:
Q  125 tgtatatttggaacggtagttaactaccgtcgga-ataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttcttg 220  Q
    |||||||||| ||||||||||||||||||  ||| ||||||| |||||||| |||||||||||||| ||||||||| | ||||||| ||| ||||||    
T  53687794 tgtatatttgaaacggtagttaactaccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttcttg 53687698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 55246049 - 55245990
Alignment:
Q  139 ggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaa 198  Q
    ||||||||||||||   | | |||||||||||||| ||||||||||||||| ||||||||    
T  55246049 ggtagttaactaccactgaagtaaaaacgtcatttccatgtgtcaatatgacgttttgaa 55245990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 9041950 - 9041876
Alignment:
Q  139 ggtagttaactaccgtcggaa-taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaa 212  Q
    ||||||||||||||| | ||  |||||||||||||| ||||| ||||||||| ||||||||| | | ||||||||    
T  9041950 ggtagttaactaccgcccgaggtaaaaacgtcatttccatgtatcaatatgacgttttgaatgtcataaaagcaa 9041876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 53688489 - 53688523
Alignment:
Q  124 ctgtatatttggaacggtagttaactaccgtcgga 158  Q
    ||||||| |||||||||||||||||||||||||||    
T  53688489 ctgtatacttggaacggtagttaactaccgtcgga 53688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 53894454 - 53894373
Alignment:
Q  133 tggaacggtagttaactaccgtc-ggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaat 213  Q
    ||||| ||||||||||||||||| ||  ||||||||||||||||| |||||| ||||  | |||| || | |||||||||||    
T  53894454 tggaatggtagttaactaccgtcaggggtaaaaacgtcattttcaggtgtcattatggagctttgtatgtcagaaaagcaat 53894373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 4221669 - 4221594
Alignment:
Q  145 taactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttcttg 220  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  4221669 taactaccgctggagtaaaaacgtcattttcatgtgtcaatatgacattttgaaggttagaaaagcaatcttcttg 4221594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 19802614 - 19802550
Alignment:
Q  136 aacggtagttaactaccgtcggaa-taaaaacgtcattttcatgtgtcaatatgatgttttgaat 199  Q
    |||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||    
T  19802614 aacggtagttaactaccgccggaggtaaaaacatcattttcatgtgtcaatatgatgttttgaat 19802550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 1634940 - 1634997
Alignment:
Q  160 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttc 217  Q
    |||||||||||||| ||||||||||||| | ||||||||| | |||||||||||||||    
T  1634940 taaaaacgtcatttccatgtgtcaatataacgttttgaatgtcagaaaagcaatcttc 1634997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 4222773 - 4222834
Alignment:
Q  137 acggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaa 198  Q
    |||| ||||||||||||  ||  |||||||||||||||||||||||||||||| ||||||||    
T  4222773 acggcagttaactaccgctggggtaaaaacgtcattttcatgtgtcaatatgacgttttgaa 4222834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 19803249 - 19803302
Alignment:
Q  160 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaat 213  Q
    |||||| ||||||||||||||||||||| | ||||||||| | |||| ||||||    
T  19803249 taaaaaagtcattttcatgtgtcaatattacgttttgaatgtcagaagagcaat 19803302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 44006462 - 44006380
Alignment:
Q  138 cggtagttaactaccgtcgga-ataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttctt 219  Q
    |||||||||||||||| || | ||||||||||||||||||| ||||||||||| ||||||||| | ||| ||| |||||||||    
T  44006462 cggtagttaactaccgccgaagataaaaacgtcattttcatatgtcaatatgaagttttgaatgtcagagaagtaatcttctt 44006380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 17773064 - 17773007
Alignment:
Q  125 tgtatatttggaacggtagttaactaccg-tcggaataaaaacgtcattttcatgtgt 181  Q
    ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  17773064 tgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgtgt 17773007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 44007544 - 44007608
Alignment:
Q  136 aacggtagttaactaccgtcg-gaataaaaacgtcattttcatgtgtcaatatgatgttttgaat 199  Q
    ||||||||||||||||||  | | |||||||||||||||  || |||||||||||||||||||||    
T  44007544 aacggtagttaactaccgctgaggataaaaacgtcatttctatatgtcaatatgatgttttgaat 44007608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 31868390 - 31868332
Alignment:
Q  160 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttct 218  Q
    ||||||||||||||||||||||||| |||| ||||||||||| | ||||||||| ||||    
T  31868390 taaaaacgtcattttcatgtgtcaacatgacgttttgaatatcaaaaaagcaattttct 31868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 19445001 - 19445058
Alignment:
Q  125 tgtatatttggaacggtagttaactaccg-tcggaataaaaacgtcattttcatgtgt 181  Q
    ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  19445001 tgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgtgt 19445058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 22436388 - 22436485
Alignment:
Q  121 gtgctgtatatttggaacggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttct 218  Q
    |||||| ||| ||||||||||||||||||| ||| ||  ||||||| |||||| ||||||| |||||||   ||||||||| |||||| |||| ||||    
T  22436388 gtgctgaatacttggaacggtagttaactatcgttggggtaaaaacatcatttccatgtgttaatatgacaatttgaatatcagaaaaacaattttct 22436485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 22424846 - 22424797
Alignment:
Q  138 cggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatat 187  Q
    ||||||||||||||||  ||| |||||| || ||||||||||||||||||    
T  22424846 cggtagttaactaccgctggagtaaaaatgttattttcatgtgtcaatat 22424797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 8969 - 8895
Alignment:
Q  138 cggtagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaa 212  Q
    ||||||||||||||||| ||| ||||||||||||||  || ||||| ||||| |||||| || ||| ||||||||    
T  8969 cggtagttaactaccgttggagtaaaaacgtcatttctatatgtcattatgaagttttgtatgttaaaaaagcaa 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 45244065 - 45244140
Alignment:
Q  125 tgtatatttggaacggtagttaactaccgtcg-gaataaaaacgtcattttcatgtgtcaatatgatgttttgaat 199  Q
    ||||||||| |||||||||||||| ||||  | || |||||| ||||||| || |||||||||||| |||||||||    
T  45244065 tgtatattttgaacggtagttaaccaccgctgagagtaaaaatgtcatttacaagtgtcaatatgaagttttgaat 45244140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 22239256 - 22239304
Alignment:
Q  160 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaa 208  Q
    |||||| |||||||||||||||||||||||  |||||||| | ||||||    
T  22239256 taaaaatgtcattttcatgtgtcaatatgacattttgaatgtcagaaaa 22239304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University