View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_6 (Length: 664)
Name: NF6594_low_6
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 24 - 592
Target Start/End: Original strand, 33647009 - 33647577
Alignment:
| Q |
24 |
aacatcgtcgacaagaaccttctagccaccatcctaactcaacaacctgaaactgaagtggagcctcgttgactttactgttatcaaaagcaatggcaga |
123 |
Q |
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| T |
33647009 |
aacatcgtggacaagaaccttctagccaccatcctaactcaacaacctgaaactgaagtggagcctcgttgactttactgttatcaaaagcaatggcaga |
33647108 |
T |
|
| Q |
124 |
aaacaaaaaattgcatccaattgtcttccaatcttcaagagcaagaacatcttcacgtggtctttgacgctgcaactgcgtgaaacaattgatattatca |
223 |
Q |
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| T |
33647109 |
aaacaaaaaattgcattcaattttcttccaatcttcaagagcaagaacatcttcacgcggtcttcgacgctgcaactgcgtgaaacaattgatattatca |
33647208 |
T |
|
| Q |
224 |
cttcttcttgaaccatcacaaccttctatctgttttccaacgaaagtcgaagctggaataacacaaccactgtagtttgaagcactacaatcttgtacga |
323 |
Q |
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| T |
33647209 |
cttcttcttgaaccatcacaaccttctatctgttttccaacgaaactcgaagctggaataacacaaccactgtagtttgaagcactacaatcttgtacga |
33647308 |
T |
|
| Q |
324 |
ggaacgtgttgttccatgttggagcatagtttttgtcgaaaagttggtttatgaaacttatgctacggttacattttgctggtaaagatatgaatatact |
423 |
Q |
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| T |
33647309 |
ggaacgtgttgttccatgttggagcatagtttttgtcgaaaagttggtttatgaaacttatgctacggttacattttgctggtaaagatatgaatatact |
33647408 |
T |
|
| Q |
424 |
atcagaattcacttcttgaacttttagttccccaatcttgagttctttattgatgctacagtttagtttgatttcacaaccttcggaaaatccaaatgga |
523 |
Q |
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| T |
33647409 |
atcagaattcacttcttgaactttcagttcaccaatcttgagttctttattgatgctgcagtttagtttgattttacaaccttcggaaaatccaaatgga |
33647508 |
T |
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| Q |
524 |
tacttaacagattgttttccacatctttgaacacagttagttttgttttgttcagcagttgttactgtt |
592 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33647509 |
tacttaacagattgttttccacatctttgaacacagtcagttttgttttgttcagcagttgttactgtt |
33647577 |
T |
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