View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_66 (Length: 272)
Name: NF6594_low_66
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 43695422 - 43695665
Alignment:
| Q |
18 |
tcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaa |
117 |
Q |
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| T |
43695422 |
tcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaa |
43695521 |
T |
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| Q |
118 |
cttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695522 |
cttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagt |
43695621 |
T |
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| Q |
218 |
tcctcccataaaacttgaagatccttacaagcctggtcattcat |
261 |
Q |
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| T |
43695622 |
tcctcccataaaacttgaagatccttacaagcctggtcattcat |
43695665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 43709432 - 43709558
Alignment:
| Q |
135 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
234 |
Q |
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| T |
43709432 |
ctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttg |
43709531 |
T |
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| Q |
235 |
aagatccttacaagcctggtcattcat |
261 |
Q |
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| T |
43709532 |
aagatccttgcaagcttgatcattcat |
43709558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 43707708 - 43707834
Alignment:
| Q |
135 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
234 |
Q |
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| T |
43707708 |
ctttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaacttt |
43707807 |
T |
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| Q |
235 |
aagatccttacaagcctggtcattcat |
261 |
Q |
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| T |
43707808 |
agtatccttacaaggttggtcattcat |
43707834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 43696407 - 43696443
Alignment:
| Q |
213 |
caagttcctcccataaaacttgaagatccttacaagc |
249 |
Q |
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| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagc |
43696443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 15827370 - 15827243
Alignment:
| Q |
134 |
gctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaactt |
233 |
Q |
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|||||||||| || ||||| |||||||||||| | |||||||| | || ||||||| |||||||||||||| ||| | ||||||||||||||||||| |
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| T |
15827370 |
gctttctccatgtatctttttattcctaaagcatagtgaacatgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaactt |
15827271 |
T |
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| Q |
234 |
gaagatccttacaagcctggtcattcat |
261 |
Q |
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|||||||||||||||| || |||||||| |
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| T |
15827270 |
gaagatccttacaagcttgttcattcat |
15827243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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