View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_72 (Length: 256)
Name: NF6594_low_72
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 47257765 - 47258014
Alignment:
| Q |
1 |
caaactatgttaatgttggatttgtagaataggtgttaattttgtacccnnnnnnn-gagaataggtgttaatttggatggatctgagaaattattagaa |
99 |
Q |
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| T |
47257765 |
caaactatgttaatgttggatttgtagaataggtgttaattttgtaccaaaaaaaaagagaataggtgttaatttggatggatctgagatattattagaa |
47257864 |
T |
|
| Q |
100 |
tgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataatatacttctgctaagaaggagaaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47257865 |
tgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataatatacttctgctaagaaggagaaatt |
47257964 |
T |
|
| Q |
200 |
tcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgatg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47257965 |
tcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgatg |
47258014 |
T |
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