View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_76 (Length: 252)
Name: NF6594_low_76
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 7010347 - 7010570
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010347 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
7010446 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010447 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctacta |
7010546 |
T |
|
| Q |
218 |
agtttgatatatgcaccacccttt |
241 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7010547 |
agtttgatatatgcaccacccttt |
7010570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 7007269 - 7007492
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7007269 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagcta |
7007368 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007369 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctacta |
7007468 |
T |
|
| Q |
218 |
agtttgatatatgcaccacccttt |
241 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
7007469 |
agtttgatatttgcaccacccttt |
7007492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1358604 - 1358791
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1358604 |
tcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1358703 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
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| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
1358704 |
ttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1358791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1374156 - 1374343
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1374156 |
tcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1374255 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
| |
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| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
1374256 |
ttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1374343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1394703 - 1394890
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1394703 |
tcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1394802 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
| |
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| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
1394803 |
ttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1350698 - 1350885
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1350698 |
tcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1350797 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
| |
|
| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
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|
| T |
1350798 |
ttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1384352 - 1384539
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1384352 |
tcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1384451 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
| |
|
| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
1384452 |
ttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1390457 - 1390644
Alignment:
| Q |
18 |
tcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagcta |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
1390457 |
tcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttg |
1390556 |
T |
|
| Q |
118 |
aagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
205 |
Q |
| |
|
| ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| |
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|
| T |
1390557 |
ttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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