View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_89 (Length: 240)
Name: NF6594_low_89
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_89 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 36360867 - 36360642
Alignment:
| Q |
18 |
catacctcgatacatagcttttgctaaatatatatattctcatcaaacaattattattcttcacctttcaaagtacatctatatatatttctcaatatag |
117 |
Q |
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| T |
36360867 |
catacctcgatacatagcttttgctaaatatatatattctcatcaaacaattattattcttcacctttcaaagtacatctatatatatttctcaatatag |
36360768 |
T |
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| Q |
118 |
tataata---caaagggaagaaattaactataatggccctcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgcttgcaatag |
214 |
Q |
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| T |
36360767 |
tataataatacaaagggaagaaattaactataatggccctcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgcttgcaatag |
36360668 |
T |
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| Q |
215 |
caacttgcaacaggacccacttatta |
240 |
Q |
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| T |
36360667 |
caacttgcaagaggacccacttatta |
36360642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 36349390 - 36349296
Alignment:
| Q |
126 |
aaagggaagaaattaactataatggccctcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgcttgcaatagcaactt |
220 |
Q |
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| T |
36349390 |
aaagggaggaaattaactataatggctctcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgcttgcagtagctactt |
36349296 |
T |
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