View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_92 (Length: 239)
Name: NF6594_low_92
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 4797957 - 4797842
Alignment:
| Q |
100 |
gtaaccaaataattcaaccccaaactaatagatatcacatcctaaatataatctaatcacaaacaaatgacaaagcccaatggaataataataacttcat |
199 |
Q |
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| T |
4797957 |
gtaaccaaataattcaaccccaaactaatagatatcacatcctaaatataatctaatcacaaacaaatgacaaagcccaatggaataataataacttcat |
4797858 |
T |
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| Q |
200 |
ccaagaattgaacgat |
215 |
Q |
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| T |
4797857 |
ccaagaattgaacgat |
4797842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 4798028 - 4797992
Alignment:
| Q |
53 |
ccatatgtttttatgcatctcaaagtcaagcacattc |
89 |
Q |
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| T |
4798028 |
ccatatgttttcatgcatctcaaagtcaagcacattc |
4797992 |
T |
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