View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_93 (Length: 239)
Name: NF6594_low_93
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 19505372 - 19505166
Alignment:
| Q |
18 |
gttgagagcttctaaataagctcaaaacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttg |
117 |
Q |
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| T |
19505372 |
gttgagagcttctaaataagctcaaaacttatggagcaaaaaatattttgttgtctacttgtatacaaaaagttcaagccacacctagtcatggtatttg |
19505273 |
T |
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| Q |
118 |
gccagttgggctataccttgttatattttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcgccatgttgtagctgg |
217 |
Q |
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| T |
19505272 |
gccagttgggctataccttgttatattttatcactgaagcttcttttaatcatggaatgagtccttatgtgtatgttacctatcgccatgttgtagctgg |
19505173 |
T |
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| Q |
218 |
gtctgtg |
224 |
Q |
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|| |||| |
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| T |
19505172 |
gtttgtg |
19505166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 32883233 - 32883415
Alignment:
| Q |
42 |
aaacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttat |
141 |
Q |
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| T |
32883233 |
aaacttatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggctatacctttttat |
32883332 |
T |
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| Q |
142 |
attttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcgccatgttgtagctgggtctgtg |
224 |
Q |
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| T |
32883333 |
attttatctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgctggggctgtg |
32883415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 32917791 - 32917950
Alignment:
| Q |
43 |
aacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttata |
142 |
Q |
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||||||||||||||||| |||||| | ||| |||| | ||| ||||||||||||||| | ||||||| || | ||| | ||||||||||| ||||| |
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| T |
32917791 |
aacttatggagcaaaaaatattttctcctctgcttggattcaagaagttcaagccacacttgatcatggtcttagcccaagttggctataccttcttata |
32917890 |
T |
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| Q |
143 |
ttttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcg |
202 |
Q |
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| T |
32917891 |
ttttatcagtgaagcttccttcaatcatggaatgagtccttatgtttatgttacatatcg |
32917950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 32933819 - 32933995
Alignment:
| Q |
42 |
aaacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttat |
141 |
Q |
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|||||||||||||||||| |||| | | ||| |||||| ||| | |||||||||||||||| ||||||| || ||| | |||||||| || ||| |
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| T |
32933819 |
aaacttatggagcaaaaaatattctctcttctgcttgtatacagagagttcaagccacacctgctcatggtcttaacccaagttggctatactttaatat |
32933918 |
T |
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| Q |
142 |
attttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcgccatgttgtagctggg |
218 |
Q |
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| T |
32933919 |
tttttatcactcaagcttcgttcaatcatggaatgagtccttatgtttatgttacgtaccggcacgttgtcgctggg |
32933995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 32949893 - 32949950
Alignment:
| Q |
139 |
tatattttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttac |
196 |
Q |
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|||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| |
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| T |
32949893 |
tatattttatcactgaagcttccttcaatcatggaatgagtccttatgtttatgttac |
32949950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 32893280 - 32893342
Alignment:
| Q |
140 |
atattttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcg |
202 |
Q |
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|||||||||||||||| |||| || |||||||| ||||||||||||| |||||||| ||||| |
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| T |
32893280 |
atattttatcactgaaacttcattcaatcatggactgagtccttatgtttatgttacatatcg |
32893342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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